{ "type": "genome", "identifier": "GCF_003666605.1", "organism": "Propionibacterium australiense", "title": "Propionibacterium australiense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Microbiology Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003666605.1", "bioproject": "PRJNA224116", "biosample": "SAMN10144179", "wgs_master": "RCIV00000000.1", "refseq_category": "na", "taxid": "119981", "species_taxid": "119981", "organism_name": "Propionibacterium australiense", "infraspecific_name": "strain=NML98A072", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/18", "asm_name": "ASM366660v1", "asm_submitter": "National Microbiology Laboratory", "gbrs_paired_asm": "GCA_003666605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/666/605/GCF_003666605.1_ASM366660v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2996433", "genome_size_ungapped": "2996433", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003666605.1-RS_2024_09_20", "annotation_date": "2024-09-20", "total_gene_count": "2701", "protein_coding_gene_count": "2604", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-18", "dateModified": "2018-10-18", "datePublished": "2018-10-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Propionibacterium australiense" ], "sample_taxid": [ "119981" ], "sample_host_organism": [ "Bos taurus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Townsville" ], "sample_host_location_id": [], "data_size": "0.817 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2996433", "Number of Sequences": "63", "Longest Sequences (bp)": "449914", "N50 (bp)": "138977", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "2664", "Average Protein Length": "324.3", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Propionibacterium australiense", "strain": "strain=NML98A072", "accession": "GCA_003666605.1", "taxid": 119981, "species_taxid": 119981, "relation_to_type": "type", "validated": true, "ani": 100.0, 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324, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionibacterium cyclohexanicum", "strain": "strain=DSM 16859", "accession": "GCA_900111365.1", "taxid": 64702, "species_taxid": 64702, "relation_to_type": "type", "validated": true, "ani": 78.5694, "matched_fragments": 285, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteococcus japonicus", "strain": "strain=DSM 10546", "accession": "GCA_003752415.1", "taxid": 33984, "species_taxid": 33984, "relation_to_type": "type", "validated": true, "ani": 77.876, "matched_fragments": 216, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brooklawnia cerclae", "strain": "strain=DSM 19609", "accession": "GCA_011758645.1", "taxid": 349934, "species_taxid": 349934, "relation_to_type": "type", "validated": true, "ani": 77.7451, "matched_fragments": 233, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raineyella fluvialis", "strain": "strain=CBA3103", "accession": "GCA_009646095.1", "taxid": 2662261, "species_taxid": 2662261, "relation_to_type": "type", "validated": true, "ani": 77.6989, "matched_fragments": 184, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava sinopodophylli", "strain": "strain=KCTC 33808", "accession": "GCA_004324755.1", "taxid": 1837344, "species_taxid": 1837344, "relation_to_type": "type", "validated": true, "ani": 77.6724, "matched_fragments": 227, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus defluvii", "strain": "strain=JCM 17540", "accession": "GCA_014489575.1", "taxid": 1285901, "species_taxid": 1285901, "relation_to_type": "type", "validated": true, "ani": 77.6188, "matched_fragments": 220, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava coleopterorum", "strain": "strain=HDW11", "accession": "GCA_011393335.1", "taxid": 2714937, "species_taxid": 2714937, "relation_to_type": "type", "validated": true, "ani": 77.5758, "matched_fragments": 235, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava soli", "strain": "strain=YIM S02567", "accession": "GCA_014858005.1", "taxid": 2775081, "species_taxid": 2775081, "relation_to_type": "type", "validated": true, "ani": 77.4969, "matched_fragments": 204, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 77.3518, "matched_fragments": 210, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans brevis", 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"GCA_000381885.1", "taxid": 1990, "species_taxid": 1990, "relation_to_type": "type", "validated": true, "ani": 75.7465, "matched_fragments": 185, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003666605.1", "gtdb_species": "s__Propionibacterium australiense", "ani": 100.0, "matched_fragments": 966, "total_fragments": 966, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_900289195.1", "gtdb_species": "s__Propionibacterium sp900289195", "ani": 89.6862, "matched_fragments": 783, "total_fragments": 966, 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