{ "type": "genome", "identifier": "GCF_003667525.1", "organism": "Mycetocola reblochoni", "title": "Mycetocola reblochoni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese center for disease control and prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003667525.1", "bioproject": "PRJNA224116", "biosample": "SAMN10234928", "wgs_master": "RCUW00000000.1", "refseq_category": "reference genome", "taxid": "331618", "species_taxid": "331618", "organism_name": "Mycetocola reblochoni", "infraspecific_name": "strain=JCM 30549", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/21", "asm_name": "ASM366752v1", "asm_submitter": "Chinese center for disease control and prevention", "gbrs_paired_asm": "GCA_003667525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/667/525/GCF_003667525.1_ASM366752v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3046112", "genome_size_ungapped": "3046112", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003667525.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2832", "protein_coding_gene_count": "2740", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-21", "dateModified": "2018-10-21", "datePublished": "2018-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycetocola reblochoni" ], "sample_taxid": [ "331618" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.818 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3046112", "Number of Sequences": "29", "Longest Sequences (bp)": "462822", "N50 (bp)": "300101", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.5", "Number of CDSs": "2799", "Average Protein Length": "331.6", "Coding Ratio (%)": "91.4", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Okibacterium fritillariae", "strain": "strain=VKM Ac-2059", "accession": "GCA_900167575.1", "taxid": 123320, "species_taxid": 123320, 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78.7084, "matched_fragments": 335, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plantibacter flavus", "strain": "strain=DSM 14012", "accession": "GCA_003755125.1", "taxid": 150123, "species_taxid": 150123, "relation_to_type": "type", "validated": true, "ani": 78.6723, "matched_fragments": 340, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter caricis", "strain": "strain=DSM 15933", "accession": "GCA_003044275.1", "taxid": 110936, "species_taxid": 110936, "relation_to_type": "type", "validated": true, "ani": 78.6463, "matched_fragments": 359, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 78.6174, "matched_fragments": 352, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia shinshuensis", "strain": "strain=DSM 15165", "accession": "GCA_013410375.1", "taxid": 150026, "species_taxid": 150026, "relation_to_type": "type", "validated": true, "ani": 78.6054, "matched_fragments": 366, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia naganoensis", "strain": "strain=DSM 15166", "accession": "GCA_013410615.1", "taxid": 150025, "species_taxid": 150025, "relation_to_type": "type", "validated": true, "ani": 78.5655, "matched_fragments": 354, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labedella phragmitis", "strain": "strain=11W25H-1", "accession": "GCA_004078635.1", "taxid": 2498849, "species_taxid": 2498849, "relation_to_type": "type", "validated": true, "ani": 78.5482, "matched_fragments": 321, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia aquatica", "strain": "strain=DSM 20146", "accession": "GCA_014190775.1", "taxid": 144185, "species_taxid": 144185, "relation_to_type": "type", "validated": true, "ani": 78.5359, "matched_fragments": 357, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labedella populi", "strain": "strain=8H24J-4-2", "accession": "GCA_004078655.1", "taxid": 2498850, "species_taxid": 2498850, "relation_to_type": "type", "validated": true, "ani": 78.5215, "matched_fragments": 280, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium oryzae", "strain": "strain=MB-10", "accession": "GCA_009735645.1", "taxid": 743009, "species_taxid": 743009, "relation_to_type": "type", "validated": true, "ani": 78.4866, "matched_fragments": 301, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium flavescens", "strain": "strain=JCM 3877", "accession": "GCA_018588945.1", "taxid": 69366, "species_taxid": 69366, "relation_to_type": "type", "validated": true, "ani": 78.457, "matched_fragments": 283, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sediminis", "strain": "strain=YLB-01", "accession": "GCA_001689915.1", "taxid": 904291, "species_taxid": 904291, "relation_to_type": "type", "validated": true, "ani": 78.4553, "matched_fragments": 289, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. insidiosus", "strain": "strain=ATCC 10253", "accession": "GCA_003076355.1", "taxid": 33014, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 78.454, "matched_fragments": 310, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sediminis", "strain": "strain=YLB-01", "accession": "GCA_004564075.1", "taxid": 904291, "species_taxid": 904291, "relation_to_type": "type", "validated": true, "ani": 78.4527, "matched_fragments": 303, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium liquefaciens", "strain": "strain=NBRC 15037", "accession": "GCA_006539765.1", "taxid": 33918, "species_taxid": 33918, "relation_to_type": "type", "validated": true, "ani": 78.4279, "matched_fragments": 294, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigoribacterium faeni", "strain": "strain=NBRC 103066", "accession": "GCA_007988805.1", "taxid": 145483, "species_taxid": 145483, "relation_to_type": "type", "validated": true, "ani": 78.4095, "matched_fragments": 315, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces luteolus", "strain": "strain=JCM 11431", "accession": "GCA_009729855.1", "taxid": 88373, "species_taxid": 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78.2892, "matched_fragments": 301, "total_fragments": 1001, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900163835.1", "gtdb_species": "s__Mycetocola_B reblochoni", "ani": 99.9332, "matched_fragments": 915, "total_fragments": 1001, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Mycetocola_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002936985.1", "gtdb_species": "s__Microterricola pindariensis", "ani": 78.9902, "matched_fragments": 337, "total_fragments": 1001, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microterricola", 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