{
    "type": "genome",
    "identifier": "GCF_003670115.1",
    "organism": "Natronorubrum halophilum",
    "title": "Natronorubrum halophilum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003670115.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09717252",
        "wgs_master": "QQTY00000000.1",
        "refseq_category": "na",
        "taxid": "1702106",
        "species_taxid": "1702106",
        "organism_name": "Natronorubrum halophilum",
        "infraspecific_name": "strain=SHR37",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/22",
        "asm_name": "ASM367011v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_003670115.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/670/115/GCF_003670115.1_ASM367011v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4665679",
        "genome_size_ungapped": "4665679",
        "gc_percent": "63.000000",
        "replicon_count": "0",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003670115.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4564",
        "protein_coding_gene_count": "4400",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-22",
    "dateModified": "2018-10-22",
    "datePublished": "2018-10-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Natronorubrum halophilum"
        ],
        "sample_taxid": [
            "1702106"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:XinJiang"
        ],
        "sample_host_location_id": [],
        "data_size": "1.285 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4665679",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "1260525",
        "N50 (bp)": "1198422",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.9",
        "Number of CDSs": "4480",
        "Average Protein Length": "289.6",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "4",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Natronorubrum halophilum",
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                "accession": "GCA_003670115.1",
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                "species_taxid": 1702106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1550,
                "total_fragments": 1553,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natronorubrum tibetense",
                "strain": "strain=GA33",
                "accession": "GCA_000337235.1",
                "taxid": 63128,
                "species_taxid": 63128,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0702,
                "matched_fragments": 924,
                "total_fragments": 1553,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum tibetense",
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                "accession": "GCA_000383975.1",
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                "species_taxid": 63128,
                "relation_to_type": "type",
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                "ani": 83.0696,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronorubrum halalkaliphilum",
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                "species_taxid": 2691917,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1553,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena alkaliphila",
                "strain": "strain=KZCA68",
                "accession": "GCA_017352155.2",
                "taxid": 2816475,
                "species_taxid": 2816475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6675,
                "matched_fragments": 877,
                "total_fragments": 1553,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena salina",
                "strain": "strain=JCM 13891",
                "accession": "GCA_000337495.1",
                "taxid": 504937,
                "species_taxid": 504937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5053,
                "matched_fragments": 941,
                "total_fragments": 1553,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena salifodinae",
                "strain": "strain=ZY19",
                "accession": "GCA_003977755.1",
                "taxid": 2675099,
                "species_taxid": 2675099,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1631,
                "matched_fragments": 947,
                "total_fragments": 1553,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haloterrigena daqingensis",
                "strain": "strain=JX313",
                "accession": "GCA_001971705.1",
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                "species_taxid": 588898,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 749,
                "total_fragments": 1553,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCA_003670115.1",
                "gtdb_species": "s__Natronorubrum sp003670115",
                "ani": 100.0,
                "matched_fragments": 1548,
                "total_fragments": 1553,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.91",
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                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900100335.1",
                "gtdb_species": "s__Natronorubrum texcoconense",
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                "total_fragments": 1553,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000383975.1",
                "gtdb_species": "s__Natronorubrum tibetense",
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                "matched_fragments": 930,
                "total_fragments": 1553,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
                "status": "-"
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            {
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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            {
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                "matched_fragments": 952,
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000025325.1",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "halophilum"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}