{ "type": "genome", "identifier": "GCF_003674065.1", "organism": "Nocardioides mangrovicus", "title": "Nocardioides mangrovicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003674065.1", "bioproject": "PRJNA224116", "biosample": "SAMN10236217", "wgs_master": "RDBE00000000.1", "refseq_category": "reference genome", "taxid": "2478913", "species_taxid": "2478913", "organism_name": "Nocardioides mangrovicus", "infraspecific_name": "strain=4Q3S-7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/23", "asm_name": "ASM367406v1", "asm_submitter": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "gbrs_paired_asm": "GCA_003674065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/674/065/GCF_003674065.1_ASM367406v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4108260", "genome_size_ungapped": "4107543", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003674065.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "4030", "protein_coding_gene_count": "3952", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-23", "dateModified": "2018-10-23", "datePublished": "2018-10-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides mangrovicus" ], "sample_taxid": [ "2478913" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Macao" ], "sample_host_location_id": [], "data_size": "1.084 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4108260", "Number of Sequences": "23", "Longest Sequences (bp)": "1132003", "N50 (bp)": "734050", "Gap Ratio (%)": "0.018597", "GCcontent (%)": "72.0", "Number of CDSs": "4004", "Average Protein Length": "321.0", "Coding Ratio (%)": "93.9", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marmoricola scoriae", "strain": "strain=DSM 22127", "accession": "GCA_900104965.1", "taxid": 642780, "species_taxid": 642780, "relation_to_type": "type", "validated": true, "ani": 80.7631, "matched_fragments": 717, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aurantiacus", "strain": "strain=DSM 12652", "accession": "GCA_003752505.1", "taxid": 86796, "species_taxid": 86796, "relation_to_type": "type", "validated": true, "ani": 80.6326, "matched_fragments": 675, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aequoreus", "strain": "strain=NRRL B-24464", "accession": "GCA_000720335.1", "taxid": 397278, "species_taxid": 397278, "relation_to_type": "type", "validated": true, "ani": 80.3907, "matched_fragments": 691, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 80.1143, "matched_fragments": 669, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 80.0875, "matched_fragments": 688, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 80.041, "matched_fragments": 659, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 79.9647, "matched_fragments": 687, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinus", "strain": "strain=DSM 18248", "accession": "GCA_013408145.1", "taxid": 374514, "species_taxid": 374514, "relation_to_type": "type", "validated": true, "ani": 79.9404, "matched_fragments": 622, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 79.9347, "matched_fragments": 657, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides guangzhouensis", "strain": "strain=130", "accession": "GCA_004519545.1", "taxid": 2497878, "species_taxid": 2497878, "relation_to_type": "type", "validated": true, "ani": 79.905, "matched_fragments": 652, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ferulae", "strain": "strain=SZ4R5S7", "accession": "GCA_003660455.1", "taxid": 2340821, "species_taxid": 2340821, "relation_to_type": "type", "validated": true, "ani": 79.8566, "matched_fragments": 677, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides anomalus", "strain": "strain=HKS04", "accession": "GCA_011046535.1", "taxid": 2712223, "species_taxid": 2712223, "relation_to_type": "type", "validated": true, "ani": 79.8554, "matched_fragments": 739, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides halotolerans", "strain": "strain=DSM 19273", "accession": "GCA_000422805.1", "taxid": 433660, "species_taxid": 433660, "relation_to_type": "type", "validated": true, "ani": 79.7708, "matched_fragments": 642, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides plantarum", "strain": "strain=DSM 11054", "accession": "GCA_006346395.1", "taxid": 29299, "species_taxid": 29299, "relation_to_type": "type", "validated": true, "ani": 79.7618, "matched_fragments": 650, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 79.7592, "matched_fragments": 615, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 79.7495, "matched_fragments": 559, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 79.7423, "matched_fragments": 658, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides litoris", "strain": "strain=DSM 103718", "accession": "GCA_006346315.1", "taxid": 1926648, "species_taxid": 1926648, "relation_to_type": "type", "validated": true, "ani": 79.7074, "matched_fragments": 694, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides iriomotensis", "strain": "strain=NBRC 105384", "accession": "GCA_004168035.1", "taxid": 715784, "species_taxid": 715784, "relation_to_type": "type", "validated": true, "ani": 79.6929, "matched_fragments": 657, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides szechwanensis", "strain": "strain=NBRC 108562", "accession": "GCA_007992395.1", "taxid": 1005944, 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