{ "type": "genome", "identifier": "GCF_003675325.1", "organism": "Streptomyces dangxiongensis", "title": "Streptomyces dangxiongensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003675325.1", "bioproject": "PRJNA224116", "biosample": "SAMN10237529", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1442032", "species_taxid": "1442032", "organism_name": "Streptomyces dangxiongensis", "infraspecific_name": "strain=Z022", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/23", "asm_name": "ASM367532v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_003675325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/675/325/GCF_003675325.1_ASM367532v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8157885", "genome_size_ungapped": "8157885", "gc_percent": "72.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003675325.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "7241", "protein_coding_gene_count": "6614", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-23", "dateModified": "2018-10-23", "datePublished": "2018-10-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces dangxiongensis" ], "sample_taxid": [ "1442032" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Dangxiong" ], "sample_host_location_id": [], "data_size": "2.171 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8157885", "Number of Sequences": "2", "Longest Sequences (bp)": "8085191", "N50 (bp)": "8085191", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "7362", "Average Protein Length": "320.7", "Coding Ratio (%)": "86.8", "Number of rRNAs": "18", "Number of tRNAs": "81", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces canarius", "strain": "strain=JCM 4733", "accession": "GCA_014650735.1", "taxid": 285453, "species_taxid": 285453, "relation_to_type": "type", "validated": true, "ani": 88.9913, "matched_fragments": 1956, 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"strain": "strain=JCM 4206", "accession": "GCA_014649115.1", "taxid": 42237, "species_taxid": 42237, "relation_to_type": "type", "validated": true, "ani": 88.2176, "matched_fragments": 1866, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubradiris", "strain": "strain=NBRC 14000", "accession": "GCA_016860525.1", "taxid": 285531, "species_taxid": 285531, "relation_to_type": "type", "validated": true, "ani": 88.2126, "matched_fragments": 1847, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces barringtoniae", "strain": "strain=JA03", "accession": "GCA_020819595.1", "taxid": 2892029, "species_taxid": 2892029, "relation_to_type": "type", "validated": true, "ani": 87.6643, "matched_fragments": 1807, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces durhamensis", "strain": "strain=NRRL B-3309", "accession": "GCA_000725475.1", "taxid": 68194, "species_taxid": 68194, "relation_to_type": "type", "validated": true, "ani": 87.5206, "matched_fragments": 1829, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fodineus", "strain": "strain=TW1S1", "accession": "GCA_001735805.1", "taxid": 1904616, "species_taxid": 1904616, "relation_to_type": "type", "validated": true, "ani": 87.4703, "matched_fragments": 1839, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces yokosukanensis", "strain": "strain=DSM 40224", "accession": "GCA_001514035.1", "taxid": 67386, "species_taxid": 67386, "relation_to_type": "type", "validated": true, "ani": 87.3142, "matched_fragments": 1844, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces broussonetiae", "strain": "strain=T44", "accession": "GCA_009796285.1", "taxid": 2686304, "species_taxid": 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"total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cahuitamycinicus", "strain": "strain=13K301", "accession": "GCA_002891435.1", "taxid": 2070367, "species_taxid": 2070367, "relation_to_type": "type", "validated": true, "ani": 84.2281, "matched_fragments": 1395, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violarus", "strain": "strain=JCM 4534", "accession": "GCA_014650255.1", "taxid": 67380, "species_taxid": 67380, "relation_to_type": "type", "validated": true, "ani": 84.2041, "matched_fragments": 1650, "total_fragments": 2719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pseudovenezuelae", "strain": "strain=DSM 40212", "accession": "GCA_001513955.1", "taxid": 67350, "species_taxid": 67350, "relation_to_type": "type", "validated": true, "ani": 84.1146, "matched_fragments": 1710, "total_fragments": 2719, "ani_threshold": 95, 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