{ "type": "genome", "identifier": "GCF_003675895.1", "organism": "Parashewanella curva", "title": "Parashewanella curva", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003675895.1", "bioproject": "PRJNA224116", "biosample": "SAMN10081840", "wgs_master": "QZEI00000000.1", "refseq_category": "reference genome", "taxid": "2338552", "species_taxid": "2338552", "organism_name": "Parashewanella curva", "infraspecific_name": "strain=C51", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/23", "asm_name": "ASM367589v1", "asm_submitter": "Guangxi University", "gbrs_paired_asm": "GCA_003675895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/675/895/GCF_003675895.1_ASM367589v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4777983", "genome_size_ungapped": "4777953", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "230", "contig_count": "233", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003675895.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "4298", "protein_coding_gene_count": "4104", "non_coding_gene_count": "106", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-23", "dateModified": "2018-10-23", "datePublished": "2018-10-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Parashewanella curva" ], "sample_taxid": [ "2338552" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: The Beibu Gulf" ], "sample_host_location_id": [], "data_size": "1.363 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4777983", "Number of Sequences": "230", "Longest Sequences (bp)": "244587", "N50 (bp)": "62733", "Gap Ratio (%)": "0.000628", "GCcontent (%)": "40.1", "Number of CDSs": "4097", "Average Protein Length": "330.4", "Coding Ratio (%)": "85.0", "Number of rRNAs": "8", "Number of tRNAs": "88", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parashewanella curva", "strain": "strain=C51", "accession": "GCA_003675895.1", "taxid": 2338552, "species_taxid": 2338552, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1479, "total_fragments": 1491, "ani_threshold": 95, 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"Shewanella japonica", "strain": "strain=KCTC 22435", "accession": "GCA_002075795.1", "taxid": 93973, "species_taxid": 93973, "relation_to_type": "type", "validated": true, "ani": 78.269, "matched_fragments": 154, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sairae", "strain": "strain=JCM 11563", "accession": "GCA_019655015.1", "taxid": 190310, "species_taxid": 190310, "relation_to_type": "type", "validated": true, "ani": 78.2655, "matched_fragments": 148, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella algicola", "strain": "strain=JCM 31091", "accession": "GCA_014648035.1", "taxid": 640633, "species_taxid": 640633, "relation_to_type": "type", "validated": true, "ani": 78.1185, "matched_fragments": 139, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella nanhaiensis", "strain": "strain=NR704-98", "accession": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella abyssi", "strain": "strain=DSM 17171", "accession": "GCA_023284025.1", "taxid": 311789, "species_taxid": 311789, "relation_to_type": "type", "validated": true, "ani": 77.4618, "matched_fragments": 125, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella surugensis", "strain": "strain=DSM 17177", "accession": "GCA_023284005.1", "taxid": 212020, "species_taxid": 212020, "relation_to_type": "type", "validated": true, "ani": 77.3897, "matched_fragments": 112, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilimonas cestriensis", "strain": "strain=MKS20", "accession": "GCA_021295315.1", "taxid": 2742685, "species_taxid": 2742685, "relation_to_type": "type", "validated": true, "ani": 76.5366, "matched_fragments": 57, "total_fragments": 1491, "ani_threshold": 95, "status": "below_threshold" } ], 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