{ "type": "genome", "identifier": "GCF_003686955.1", "organism": "Streptococcus hillyeri", "title": "Streptococcus hillyeri", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Edinburgh", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003686955.1", "bioproject": "PRJNA224116", "biosample": "SAMN09762592", "wgs_master": "RCVM00000000.1", "refseq_category": "na", "taxid": "2282420", "species_taxid": "2282420", "organism_name": "Streptococcus hillyeri", "infraspecific_name": "strain=28462", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/24", "asm_name": "ASM368695v1", "asm_submitter": "University of Edinburgh", "gbrs_paired_asm": "GCA_003686955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/686/955/GCF_003686955.1_ASM368695v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2147614", "genome_size_ungapped": "2147614", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003686955.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2093", "protein_coding_gene_count": "1972", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-24", "dateModified": "2018-10-24", "datePublished": "2018-10-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus hillyeri" ], "sample_taxid": [ "2282420" ], "sample_host_organism": [ "Equus ferus caballus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom: England" ], "sample_host_location_id": [], "data_size": "0.612 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2147614", "Number of Sequences": "83", "Longest Sequences (bp)": "350544", "N50 (bp)": "82898", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.5", "Number of CDSs": "2022", "Average Protein Length": "299.6", "Coding Ratio (%)": "84.6", "Number of rRNAs": "4", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus hillyeri", "strain": "strain=28462", "accession": "GCA_003686955.1", "taxid": 2282420, "species_taxid": 2282420, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 684, "total_fragments": 685, 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"Streptococcus henryi", "strain": "strain=DSM 19005", "accession": "GCA_000376985.1", "taxid": 439219, "species_taxid": 439219, "relation_to_type": "type", "validated": true, "ani": 79.4997, "matched_fragments": 171, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.27, "matched_fragments": 115, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus saliviloxodontae", "strain": "strain=DSM 27513", "accession": "GCA_016908655.1", "taxid": 1349416, "species_taxid": 1349416, "relation_to_type": "type", "validated": true, "ani": 79.2313, "matched_fragments": 162, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=NCTC 8618", "accession": "GCA_000785515.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1875, "matched_fragments": 120, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=JCM 5707", "accession": "GCA_019972895.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1491, "matched_fragments": 125, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus plurextorum", "strain": "strain=DSM 22810", "accession": "GCA_000423745.1", "taxid": 456876, "species_taxid": 456876, "relation_to_type": "type", "validated": true, "ani": 79.1395, "matched_fragments": 209, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vestibularis", "strain": "strain=ATCC 49124", "accession": "GCA_000188295.1", "taxid": 1343, "species_taxid": 1343, "relation_to_type": "type", "validated": true, "ani": 79.0917, "matched_fragments": 124, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantarius", "strain": "strain=NCTC13760", "accession": "GCA_900459445.1", "taxid": 102684, "species_taxid": 102684, "relation_to_type": "type", "validated": true, "ani": 79.071, "matched_fragments": 147, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 79.0604, "matched_fragments": 111, "total_fragments": 685, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus loxodontisalivarius", "strain": "strain=DSM 27382", "accession": "GCA_016908645.1", "taxid": 1349415, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "hillyeri" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }