{ "type": "genome", "identifier": "GCF_003688405.1", "organism": "Ulvibacter antarcticus", "title": "Ulvibacter antarcticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003688405.1", "bioproject": "PRJNA224116", "biosample": "SAMN06264851", "wgs_master": "REFC00000000.1", "refseq_category": "reference genome", "taxid": "442714", "species_taxid": "442714", "organism_name": "Ulvibacter antarcticus", "infraspecific_name": "strain=DSM 23424", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/25", "asm_name": "ASM368840v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003688405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/688/405/GCF_003688405.1_ASM368840v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3845875", "genome_size_ungapped": "3845711", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003688405.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3394", "protein_coding_gene_count": "3339", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-25", "dateModified": "2018-10-25", "datePublished": "2018-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Ulvibacter antarcticus" ], "sample_taxid": [ "442714" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.082 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3845875", "Number of Sequences": "19", "Longest Sequences (bp)": "1039744", "N50 (bp)": "912414", "Gap Ratio (%)": "0.004264", "GCcontent (%)": "36.7", "Number of CDSs": "3319", "Average Protein Length": "339.6", "Coding Ratio (%)": "87.9", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ulvibacter antarcticus", "strain": "strain=DSM 23424", "accession": "GCA_003688405.1", "taxid": 442714, "species_taxid": 442714, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1270, "total_fragments": 1271, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=DSM 16195", "accession": "GCA_900102055.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 78.1247, "matched_fragments": 361, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter litoralis", "strain": "strain=KCTC 12104", "accession": "GCA_014651275.1", "taxid": 227084, "species_taxid": 227084, "relation_to_type": "type", "validated": true, "ani": 78.105, "matched_fragments": 361, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patiriisocius marinistellae", "strain": "strain=KK4", "accession": "GCA_009014635.1", "taxid": 2494560, "species_taxid": 2494560, "relation_to_type": "type", "validated": true, "ani": 77.3312, "matched_fragments": 146, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita lipolytica", "strain": "strain=Y10-2", "accession": "GCA_007997135.1", "taxid": 153267, "species_taxid": 153267, "relation_to_type": "type", "validated": true, "ani": 77.2261, "matched_fragments": 152, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochleicola gelatinilyticus", "strain": "strain=LPB0005", "accession": "GCA_001637325.1", "taxid": 1763537, "species_taxid": 1763537, "relation_to_type": "type", "validated": true, "ani": 77.2194, "matched_fragments": 211, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patiriisocius marinus", "strain": "strain=NBRC 109484", "accession": "GCA_008974325.1", "taxid": 1397112, "species_taxid": 1397112, "relation_to_type": "type", "validated": true, "ani": 77.1942, "matched_fragments": 160, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sinensis", "strain": "strain=S1-10", "accession": "GCA_006346335.1", "taxid": 1382458, "species_taxid": 1382458, "relation_to_type": "type", "validated": true, "ani": 77.0912, "matched_fragments": 133, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia antarctica", "strain": "strain=IMCC3317", "accession": "GCA_009901525.1", "taxid": 1218801, "species_taxid": 1218801, "relation_to_type": "type", "validated": true, "ani": 77.01, "matched_fragments": 96, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altibacter lentus", "strain": "strain=JLT2010", "accession": "GCA_000746845.1", "taxid": 1223410, "species_taxid": 1223410, "relation_to_type": "type", "validated": true, "ani": 76.9892, "matched_fragments": 143, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita echinoideorum", "strain": "strain=JCM30378", "accession": "GCA_018476645.1", "taxid": 1549647, "species_taxid": 1549647, "relation_to_type": "type", "validated": true, "ani": 76.8247, "matched_fragments": 106, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomarinibacterium sedimenti", "strain": "strain=CAU 1614", "accession": "GCA_019312585.1", "taxid": 2857106, "species_taxid": 2857106, "relation_to_type": "type", "validated": true, "ani": 76.7727, "matched_fragments": 145, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita viscosa", "strain": "strain=CGMCC 1.11023", "accession": "GCA_900106795.1", "taxid": 797419, "species_taxid": 797419, "relation_to_type": "type", "validated": true, "ani": 76.6078, "matched_fragments": 113, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita viscosa", "strain": "strain=DSM 26349", "accession": "GCA_900141955.1", "taxid": 797419, "species_taxid": 797419, "relation_to_type": "type", "validated": true, "ani": 76.5694, "matched_fragments": 115, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 76.5244, "matched_fragments": 74, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.4624, "matched_fragments": 85, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter sediminis", "strain": "strain=DSM 28135", "accession": "GCA_004364975.1", "taxid": 1608710, "species_taxid": 1608710, "relation_to_type": "type", "validated": true, "ani": 76.4584, "matched_fragments": 70, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 76.4427, "matched_fragments": 78, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia argentinensis", "strain": "strain=JUB59", "accession": "GCA_000224335.2", "taxid": 456455, "species_taxid": 456455, "relation_to_type": "type", "validated": true, "ani": 76.4337, "matched_fragments": 80, "total_fragments": 1271, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003688405.1", "gtdb_species": "s__Ulvibacter antarcticus", "ani": 100.0, "matched_fragments": 1270, "total_fragments": 1271, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002813135.1", "gtdb_species": "s__Altibacter sp002813135", "ani": 77.2778, "matched_fragments": 206, "total_fragments": 1271, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Altibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007997135.1", "gtdb_species": "s__Aequorivita lipolytica", "ani": 77.2241, "matched_fragments": 153, "total_fragments": 1271, "gtdb_taxonomy": 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