{ "type": "genome", "identifier": "GCF_003688495.1", "organism": "Flavobacterium weaverense", "title": "Flavobacterium weaverense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003688495.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443664", "wgs_master": "REFH00000000.1", "refseq_category": "reference genome", "taxid": "271156", "species_taxid": "271156", "organism_name": "Flavobacterium weaverense", "infraspecific_name": "strain=DSM 19727", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/25", "asm_name": "ASM368849v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003688495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/688/495/GCF_003688495.1_ASM368849v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3397857", "genome_size_ungapped": "3397857", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003688495.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2929", "protein_coding_gene_count": "2866", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-25", "dateModified": "2018-10-25", "datePublished": "2018-10-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium weaverense" ], "sample_taxid": [ "271156" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.947 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3397857", "Number of Sequences": "15", "Longest Sequences (bp)": "824113", "N50 (bp)": "720142", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.8", "Number of CDSs": "2868", "Average Protein Length": "340.5", "Coding Ratio (%)": "86.2", "Number of rRNAs": "2", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium weaverense", "strain": "strain=DSM 19727", "accession": "GCA_003688495.1", "taxid": 271156, "species_taxid": 271156, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1125, "total_fragments": 1125, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 82.6761, "matched_fragments": 736, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium segetis", "strain": "strain=DSM 19741", "accession": "GCA_900129575.1", "taxid": 271157, "species_taxid": 271157, "relation_to_type": "type", "validated": true, "ani": 81.0818, "matched_fragments": 611, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xanthum", "strain": "strain=DSM 3661", "accession": "GCA_900142695.1", "taxid": 69322, "species_taxid": 69322, "relation_to_type": "type", "validated": true, "ani": 80.4147, "matched_fragments": 565, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium micromati", "strain": "strain=DSM 17659", "accession": "GCA_900129585.1", "taxid": 229205, "species_taxid": 229205, "relation_to_type": "type", "validated": true, "ani": 80.2951, "matched_fragments": 557, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 80.2647, "matched_fragments": 584, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_001637185.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 80.2057, "matched_fragments": 584, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 80.182, "matched_fragments": 594, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_900143245.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 80.182, "matched_fragments": 583, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 80.182, "matched_fragments": 545, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 80.1465, "matched_fragments": 568, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caseinilyticum", "strain": "strain=AT-3-2", "accession": "GCA_004349085.1", "taxid": 2541732, "species_taxid": 2541732, "relation_to_type": "type", "validated": true, "ani": 79.8869, "matched_fragments": 506, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 79.6537, "matched_fragments": 505, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 79.6121, "matched_fragments": 527, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hiemivividum", "strain": "strain=TSA-D2", "accession": "GCA_004349145.1", "taxid": 2541734, "species_taxid": 2541734, "relation_to_type": "type", "validated": true, "ani": 79.5504, "matched_fragments": 444, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.5308, "matched_fragments": 338, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.1999, "matched_fragments": 339, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.1793, "matched_fragments": 327, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 78.0698, "matched_fragments": 340, "total_fragments": 1125, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium litorale", "strain": "strain=WSW3-B6", "accession": "GCA_019613795.1", "taxid": 2856519, "species_taxid": 2856519, "relation_to_type": "type", 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