{
    "type": "genome",
    "identifier": "GCF_003688935.1",
    "organism": "Corynebacterium macginleyi",
    "title": "Corynebacterium macginleyi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Microbiology Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003688935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10236834",
        "wgs_master": "REGE00000000.1",
        "refseq_category": "na",
        "taxid": "38290",
        "species_taxid": "38290",
        "organism_name": "Corynebacterium macginleyi",
        "infraspecific_name": "strain=CCUG 32361",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/25",
        "asm_name": "ASM368893v1",
        "asm_submitter": "National Microbiology Laboratory",
        "gbrs_paired_asm": "GCA_003688935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/688/935/GCF_003688935.1_ASM368893v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2419073",
        "genome_size_ungapped": "2419073",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "56",
        "contig_count": "56",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003688935.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "2368",
        "protein_coding_gene_count": "2194",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-25",
    "dateModified": "2018-10-25",
    "datePublished": "2018-10-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium macginleyi"
        ],
        "sample_taxid": [
            "38290"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Sarrebourg"
        ],
        "sample_host_location_id": [],
        "data_size": "0.693 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2419073",
        "Number of Sequences": "56",
        "Longest Sequences (bp)": "345378",
        "N50 (bp)": "128157",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.1",
        "Number of CDSs": "2391",
        "Average Protein Length": "289.0",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Corynebacterium macginleyi",
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                "species_taxid": 38290,
                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium macginleyi",
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                "accession": "GCA_016889465.1",
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                "species_taxid": 38290,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9993,
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                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium accolens",
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                "accession": "GCA_000159115.1",
                "taxid": 38284,
                "species_taxid": 38284,
                "relation_to_type": "type",
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                "ani": 88.0851,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium accolens",
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                "accession": "GCA_023520795.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 88.065,
                "matched_fragments": 671,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium tuberculostearicum",
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                "accession": "GCA_016728365.1",
                "taxid": 38304,
                "species_taxid": 38304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.183,
                "matched_fragments": 427,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium striatum",
                "strain": "strain=FDAARGOS_1054",
                "accession": "GCA_016403285.1",
                "taxid": 43770,
                "species_taxid": 43770,
                "relation_to_type": "type",
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                "ani": 78.7488,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium vitaeruminis",
                "strain": "strain=DSM 20294",
                "accession": "GCA_000550805.1",
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                "species_taxid": 38305,
                "relation_to_type": "type",
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                "ani": 77.3338,
                "matched_fragments": 115,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium ureicelerivorans",
                "strain": "strain=IMMIB RIV-2301",
                "accession": "GCA_000747315.1",
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                "species_taxid": 401472,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 105,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_003688935.1",
                "gtdb_species": "s__Corynebacterium macginleyi",
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                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "97.89",
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                "num_clustered_genomes": 26,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.20",
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                "num_clustered_genomes": 10,
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            },
            {
                "accession": "GCF_000478175.1",
                "gtdb_species": "s__Corynebacterium sp000478175",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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            },
            {
                "accession": "GCF_016894265.1",
                "gtdb_species": "s__Corynebacterium tuberculostearicum_D",
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                "matched_fragments": 423,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
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            {
                "accession": "GCF_016127015.1",
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    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}