{ "type": "genome", "identifier": "GCF_003696215.1", "organism": "Actinomadura harenae", "title": "Actinomadura harenae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003696215.1", "bioproject": "PRJNA224116", "biosample": "SAMN10284833", "wgs_master": "RFFG00000000.1", "refseq_category": "reference genome", "taxid": "2483351", "species_taxid": "2483351", "organism_name": "Actinomadura harenae", "infraspecific_name": "strain=NEAU-Ht49", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/29", "asm_name": "ASM369621v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_003696215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/696/215/GCF_003696215.1_ASM369621v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9356375", "genome_size_ungapped": "9356345", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "280", "contig_count": "280", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003696215.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "8731", "protein_coding_gene_count": "8495", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-29", "dateModified": "2018-10-29", "datePublished": "2018-10-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura harenae" ], "sample_taxid": [ "2483351" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Sanya" ], "sample_host_location_id": [], "data_size": "2.505 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9356375", "Number of Sequences": "280", "Longest Sequences (bp)": "228591", "N50 (bp)": "76638", "Gap Ratio (%)": "0.000321", "GCcontent (%)": "72.1", "Number of CDSs": "8481", "Average Protein Length": "313.3", "Coding Ratio (%)": "85.2", "Number of rRNAs": "7", "Number of tRNAs": "86", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinomadura harenae", "strain": "strain=NEAU-Ht49", "accession": "GCA_003696215.1", "taxid": 2483351, "species_taxid": 2483351, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2973, "total_fragments": 2985, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinomadura oligospora", "strain": "strain=ATCC 43269", "accession": "GCA_000518265.1", "taxid": 111804, "species_taxid": 111804, "relation_to_type": "type", "validated": true, "ani": 90.5766, "matched_fragments": 2357, "total_fragments": 2985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura logoneensis", "strain": "strain=NEAU-G17", "accession": "GCA_003428695.1", "taxid": 2293572, "species_taxid": 2293572, "relation_to_type": "type", "validated": true, "ani": 88.3922, "matched_fragments": 1759, "total_fragments": 2985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 87.2644, "matched_fragments": 2120, "total_fragments": 2985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura macrotermitis", "strain": "strain=RB68", "accession": "GCA_009604375.1", "taxid": 2585200, "species_taxid": 2585200, "relation_to_type": "type", "validated": true, "ani": 81.5719, "matched_fragments": 1494, "total_fragments": 2985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 81.1916, "matched_fragments": 1649, "total_fragments": 2985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura bangladeshensis", "strain": "strain=DSM 45347", "accession": "GCA_004348335.1", "taxid": 453573, "species_taxid": 453573, "relation_to_type": "type", "validated": true, "ani": 81.1908, "matched_fragments": 1300, "total_fragments": 2985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura nitritigenes", "strain": "strain=L46", "accession": "GCA_017573545.1", "taxid": 134602, "species_taxid": 134602, "relation_to_type": "type", "validated": true, "ani": 81.1868, "matched_fragments": 1630, "total_fragments": 2985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 80.9716, "matched_fragments": 1490, "total_fragments": 2985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura roseirufa", "strain": "", "accession": "GCA_900659635.1", "taxid": 2094049, "species_taxid": 2094049, "relation_to_type": "type", "validated": true, "ani": 80.7535, "matched_fragments": 1282, "total_fragments": 2985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura graeca", "strain": "strain=32-07", "accession": "GCA_019175365.1", "taxid": 2750812, 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