{ "type": "genome", "identifier": "GCF_003697785.1", "organism": "Paracoccus alkanivorans", "title": "Paracoccus alkanivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003697785.1", "bioproject": "PRJNA224116", "biosample": "SAMN08783551", "wgs_master": "QOKZ00000000.1", "refseq_category": "reference genome", "taxid": "2116655", "species_taxid": "2116655", "organism_name": "Paracoccus alkanivorans", "infraspecific_name": "strain=4-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/10/29", "asm_name": "ASM369778v1", "asm_submitter": "China Agricultural University", "gbrs_paired_asm": "GCA_003697785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/697/785/GCF_003697785.1_ASM369778v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4662693", "genome_size_ungapped": "4662693", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003697785.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "4543", "protein_coding_gene_count": "4412", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-10-29", "dateModified": "2018-10-29", "datePublished": "2018-10-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccus alkanivorans" ], "sample_taxid": [ "2116655" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:XinJiang" ], "sample_host_location_id": [], "data_size": "1.298 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4662693", "Number of Sequences": "39", "Longest Sequences (bp)": "942810", "N50 (bp)": "449900", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "4460", "Average Protein Length": "308.4", "Coding Ratio (%)": "88.5", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus siganidrum", "strain": "strain=DSM 26381", "accession": "GCA_003594835.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 81.7522, "matched_fragments": 701, 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"below_threshold" }, { "organism_name": "Paracoccus salsus", "strain": "strain=EGI L200073", "accession": "GCA_021556615.1", "taxid": 2911061, "species_taxid": 2911061, "relation_to_type": "type", "validated": true, "ani": 80.4347, "matched_fragments": 570, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus zeaxanthinifaciens", "strain": "strain=ATCC 21588", "accession": "GCA_000420145.1", "taxid": 187400, "species_taxid": 187400, "relation_to_type": "type", "validated": true, "ani": 80.3236, "matched_fragments": 532, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 80.3066, "matched_fragments": 594, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus homiensis", "strain": "strain=DSM 17862", "accession": "GCA_900111675.1", "taxid": 364199, "species_taxid": 364199, "relation_to_type": "type", "validated": true, "ani": 80.2689, "matched_fragments": 648, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus fontiphilus", "strain": "strain=MVW-1", "accession": "GCA_017356265.1", "taxid": 1815556, "species_taxid": 1815556, "relation_to_type": "type", "validated": true, "ani": 80.0905, "matched_fragments": 570, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": "GCA_016757275.1", "taxid": 1915382, "species_taxid": 1915382, "relation_to_type": "type", "validated": true, "ani": 79.9713, "matched_fragments": 576, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 79.9343, "matched_fragments": 594, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=DSM 26170", "accession": "GCA_900188295.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 79.8442, "matched_fragments": 546, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus indicus", "strain": "strain=IO390502", "accession": "GCA_003056335.1", "taxid": 2079229, "species_taxid": 2079229, "relation_to_type": "type", "validated": true, "ani": 79.7961, "matched_fragments": 559, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminilitoris", "strain": "strain=DSL-16", "accession": "GCA_003259195.1", "taxid": 2202419, 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alkanivorans", "ani": 100.0, "matched_fragments": 1533, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003007735.2", "gtdb_species": "s__Paracoccus marinus_A", "ani": 88.9237, "matched_fragments": 972, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900156835.1", "gtdb_species": "s__Paracoccus saliphilus", "ani": 86.8731, 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