{
    "type": "genome",
    "identifier": "GCF_003703815.1",
    "organism": "Corticibacter populi",
    "title": "Corticibacter populi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Microbiology Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003703815.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10231866",
        "wgs_master": "RDQO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1550736",
        "species_taxid": "1550736",
        "organism_name": "Corticibacter populi",
        "infraspecific_name": "strain=DSM 105136",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/30",
        "asm_name": "ASM370381v1",
        "asm_submitter": "National Microbiology Laboratory",
        "gbrs_paired_asm": "GCA_003703815.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/703/815/GCF_003703815.1_ASM370381v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4201169",
        "genome_size_ungapped": "4201169",
        "gc_percent": "65.500000",
        "replicon_count": "0",
        "scaffold_count": "13",
        "contig_count": "13",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003703815.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "3792",
        "protein_coding_gene_count": "3674",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-30",
    "dateModified": "2018-10-30",
    "datePublished": "2018-10-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corticibacter populi"
        ],
        "sample_taxid": [
            "1550736"
        ],
        "sample_host_organism": [
            "Populus sp."
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Heze City"
        ],
        "sample_host_location_id": [],
        "data_size": "1.153 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4201169",
        "Number of Sequences": "13",
        "Longest Sequences (bp)": "1576605",
        "N50 (bp)": "733041",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.4",
        "Number of CDSs": "3742",
        "Average Protein Length": "333.7",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Corticibacter populi",
                "strain": "strain=DSM 105136",
                "accession": "GCA_003703815.1",
                "taxid": 1550736,
                "species_taxid": 1550736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1394,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corticibacter populi",
                "strain": "strain=DSM 105136",
                "accession": "GCA_004217315.1",
                "taxid": 1550736,
                "species_taxid": 1550736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9993,
                "matched_fragments": 1391,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Melaminivora alkalimesophila",
                "strain": "strain=CY1",
                "accession": "GCA_000282995.1",
                "taxid": 1165852,
                "species_taxid": 1165852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6105,
                "matched_fragments": 324,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Melaminivora alkalimesophila",
                "strain": "strain=DSM 26006",
                "accession": "GCA_003182375.1",
                "taxid": 1165852,
                "species_taxid": 1165852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4917,
                "matched_fragments": 436,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas phosphati",
                "strain": "strain=CGMCC 1.12294",
                "accession": "GCA_014637085.1",
                "taxid": 1211803,
                "species_taxid": 1211803,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4512,
                "matched_fragments": 440,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax anthurii",
                "strain": "strain=CFPB 3232",
                "accession": "GCA_003269065.1",
                "taxid": 78229,
                "species_taxid": 78229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3343,
                "matched_fragments": 483,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lampropedia hyalina",
                "strain": "strain=DSM 16112",
                "accession": "GCA_900129055.1",
                "taxid": 198706,
                "species_taxid": 198706,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2361,
                "matched_fragments": 430,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter tataouinensis",
                "strain": "strain=TTB310",
                "accession": "GCA_000215705.1",
                "taxid": 94132,
                "species_taxid": 94132,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2288,
                "matched_fragments": 439,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hydrogenophaga crocea",
                "strain": "strain=BA0156",
                "accession": "GCA_011388215.1",
                "taxid": 2716225,
                "species_taxid": 2716225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2001,
                "matched_fragments": 441,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax cattleyae",
                "strain": "strain=DSM 17101",
                "accession": "GCA_900104515.1",
                "taxid": 80868,
                "species_taxid": 80868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1553,
                "matched_fragments": 483,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax citrulli",
                "strain": "strain=DSM 17060",
                "accession": "GCA_900100305.1",
                "taxid": 80869,
                "species_taxid": 80869,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0944,
                "matched_fragments": 444,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas terrae",
                "strain": "strain=NBRC 106524",
                "accession": "GCA_001544075.1",
                "taxid": 673548,
                "species_taxid": 673548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0625,
                "matched_fragments": 503,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudorhodoferax aquiterrae",
                "strain": "strain=KCTC 23314",
                "accession": "GCA_014652235.1",
                "taxid": 747304,
                "species_taxid": 747304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.981,
                "matched_fragments": 574,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax caeni",
                "strain": "strain=R-24608",
                "accession": "GCA_900116825.1",
                "taxid": 343013,
                "species_taxid": 343013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9804,
                "matched_fragments": 423,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter humi",
                "strain": "strain=18x22-1",
                "accession": "GCA_004681975.1",
                "taxid": 2530451,
                "species_taxid": 2530451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8462,
                "matched_fragments": 415,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Extensimonas perlucida",
                "strain": "strain=HX2-24",
                "accession": "GCA_007655255.1",
                "taxid": 2590786,
                "species_taxid": 2590786,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.679,
                "matched_fragments": 357,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter henchirensis",
                "strain": "strain=DSM 14656",
                "accession": "GCA_004682015.1",
                "taxid": 204072,
                "species_taxid": 204072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6555,
                "matched_fragments": 383,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter pinisoli",
                "strain": "strain=MAH-25",
                "accession": "GCA_009758015.1",
                "taxid": 2682844,
                "species_taxid": 2682844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5723,
                "matched_fragments": 451,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidovorax valerianellae",
                "strain": "strain=DSM 16619",
                "accession": "GCA_900102625.1",
                "taxid": 187868,
                "species_taxid": 187868,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.443,
                "matched_fragments": 454,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Curvibacter lanceolatus",
                "strain": "strain=ATCC 14669",
                "accession": "GCA_000381265.1",
                "taxid": 86182,
                "species_taxid": 86182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4279,
                "matched_fragments": 465,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas koreensis",
                "strain": "strain=KCTC 12005",
                "accession": "GCA_021026195.1",
                "taxid": 160825,
                "species_taxid": 160825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3311,
                "matched_fragments": 427,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ottowia testudinis",
                "strain": "strain=27C",
                "accession": "GCA_017498525.1",
                "taxid": 2816950,
                "species_taxid": 2816950,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3231,
                "matched_fragments": 418,
                "total_fragments": 1394,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004217315.1",
                "gtdb_species": "s__Lampropedia populi",
                "ani": 99.9993,
                "matched_fragments": 1391,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002285265.1",
                "gtdb_species": "s__Lampropedia sp002285265",
                "ani": 81.0467,
                "matched_fragments": 560,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.24",
                "min_intra_species_ani": "95.49",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002285285.1",
                "gtdb_species": "s__Lampropedia sp002285285",
                "ani": 80.6472,
                "matched_fragments": 516,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.35",
                "min_intra_species_ani": "97.22",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_001005215.1",
                "gtdb_species": "s__Lampropedia cohaerens",
                "ani": 80.2243,
                "matched_fragments": 535,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014637085.1",
                "gtdb_species": "s__Comamonas phosphati",
                "ani": 79.4351,
                "matched_fragments": 441,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001725235.1",
                "gtdb_species": "s__Acidovorax_C sp001725235",
                "ani": 79.3596,
                "matched_fragments": 529,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "96.90",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_009912175.1",
                "gtdb_species": "s__Comamonas_F wautersii_A",
                "ani": 79.3094,
                "matched_fragments": 477,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003703475.1",
                "gtdb_species": "s__Lampropedia sp003703475",
                "ani": 79.2599,
                "matched_fragments": 392,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900129055.1",
                "gtdb_species": "s__Lampropedia hyalina",
                "ani": 79.2032,
                "matched_fragments": 433,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100305.1",
                "gtdb_species": "s__Acidovorax_A citrulli",
                "ani": 79.067,
                "matched_fragments": 446,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_001422445.1",
                "gtdb_species": "s__Pseudorhodoferax sp001422445",
                "ani": 78.968,
                "matched_fragments": 552,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudorhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001422365.1",
                "gtdb_species": "s__Pseudorhodoferax sp001422365",
                "ani": 78.858,
                "matched_fragments": 582,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudorhodoferax",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_001724785.1",
                "gtdb_species": "s__Giesbergeria sp001724785",
                "ani": 78.7774,
                "matched_fragments": 326,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016909295.1",
                "gtdb_species": "s__Comamonas_F sediminis",
                "ani": 78.6782,
                "matched_fragments": 414,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013778345.1",
                "gtdb_species": "s__Ramlibacter sp013778345",
                "ani": 78.5599,
                "matched_fragments": 453,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ramlibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017998575.1",
                "gtdb_species": "s__JAGOCV01 sp017998575",
                "ani": 78.3508,
                "matched_fragments": 341,
                "total_fragments": 1394,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAGOCV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Corticibacter",
        "populi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}