{
    "type": "genome",
    "identifier": "GCF_003703835.1",
    "organism": "Auritidibacter ignavus",
    "title": "Auritidibacter ignavus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Microbiology Laboratory",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003703835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09780050",
        "wgs_master": "RDQR00000000.1",
        "refseq_category": "na",
        "taxid": "678932",
        "species_taxid": "678932",
        "organism_name": "Auritidibacter ignavus",
        "infraspecific_name": "strain=IMMIB L-1656",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/10/30",
        "asm_name": "ASM370383v1",
        "asm_submitter": "National Microbiology Laboratory",
        "gbrs_paired_asm": "GCA_003703835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/703/835/GCF_003703835.1_ASM370383v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2589795",
        "genome_size_ungapped": "2589795",
        "gc_percent": "59.500000",
        "replicon_count": "0",
        "scaffold_count": "53",
        "contig_count": "53",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003703835.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "2425",
        "protein_coding_gene_count": "2314",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-10-30",
    "dateModified": "2018-10-30",
    "datePublished": "2018-10-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Auritidibacter ignavus"
        ],
        "sample_taxid": [
            "678932"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.740 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2589795",
        "Number of Sequences": "53",
        "Longest Sequences (bp)": "373036",
        "N50 (bp)": "92097",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.3",
        "Number of CDSs": "2390",
        "Average Protein Length": "318.8",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Auritidibacter ignavus",
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                "relation_to_type": "type",
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            },
            {
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                "accession": "GCA_011758685.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 827,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Enteractinococcus helveticum",
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                "matched_fragments": 62,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enteractinococcus coprophilus",
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                "accession": "GCA_006716305.1",
                "taxid": 1027633,
                "species_taxid": 1027633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5744,
                "matched_fragments": 69,
                "total_fragments": 840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Citricoccus muralis",
                "strain": "strain=DSM 14442",
                "accession": "GCA_003386075.1",
                "taxid": 169134,
                "species_taxid": 169134,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2245,
                "matched_fragments": 80,
                "total_fragments": 840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria rhizophila",
                "strain": "strain=TA68",
                "accession": "GCA_003667225.1",
                "taxid": 72000,
                "species_taxid": 72000,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0741,
                "matched_fragments": 53,
                "total_fragments": 840,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter woluwensis",
                "strain": "strain=DSM 10495",
                "accession": "GCA_900105345.1",
                "taxid": 156980,
                "species_taxid": 156980,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4286,
                "matched_fragments": 50,
                "total_fragments": 840,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003703835.1",
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                "matched_fragments": 838,
                "total_fragments": 840,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Auritidibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001657475.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Enteractinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006716305.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Enteractinococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003386075.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_900116905.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000224415.1",
                "gtdb_species": "s__Citricoccus sp000224415",
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            },
            {
                "accession": "GCA_013393415.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Yaniella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.347,
        "cell_length": 0.361,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 23.5,
        "optimum_ph": 9.0,
        "genome_size": null,
        "gc_content": null,
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        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Auritidibacter",
        "ignavus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}