{ "type": "genome", "identifier": "GCF_003710085.1", "organism": "Nocardioides pantholopis", "title": "Nocardioides pantholopis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003710085.1", "bioproject": "PRJNA224116", "biosample": "SAMN10290708", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2483798", "species_taxid": "2483798", "organism_name": "Nocardioides pantholopis", "infraspecific_name": "strain=603", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/03", "asm_name": "ASM371008v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_003710085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/710/085/GCF_003710085.1_ASM371008v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4041717", "genome_size_ungapped": "4041717", "gc_percent": "73.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003710085.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "3901", "protein_coding_gene_count": "3809", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-03", "dateModified": "2018-11-03", "datePublished": "2018-11-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides pantholopis" ], "sample_taxid": [ "2483798" ], "sample_host_organism": [ "Tibetan antelope" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:haixi city" ], "sample_host_location_id": [], "data_size": "1.056 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4041717", "Number of Sequences": "1", "Longest Sequences (bp)": "4041717", "N50 (bp)": "4041717", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.2", "Number of CDSs": "3875", "Average Protein Length": "322.6", "Coding Ratio (%)": "92.8", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, 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"strain": "strain=HKS04", "accession": "GCA_011046535.1", "taxid": 2712223, "species_taxid": 2712223, "relation_to_type": "type", "validated": true, "ani": 80.9398, "matched_fragments": 792, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 80.8711, "matched_fragments": 634, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sediminis", "strain": "strain=KCTC 19271", "accession": "GCA_003047295.1", "taxid": 433648, "species_taxid": 433648, "relation_to_type": "type", "validated": true, "ani": 80.8689, "matched_fragments": 680, "total_fragments": 1347, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides exalbidus", "strain": "strain=DSM 22017", "accession": 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