{ "type": "genome", "identifier": "GCF_003710825.1", "organism": "Brevibacillus fluminis", "title": "Brevibacillus fluminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NCAUR-ARS-USDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003710825.1", "bioproject": "PRJNA224116", "biosample": "SAMN10330925", "wgs_master": "RHHQ00000000.1", "refseq_category": "reference genome", "taxid": "511487", "species_taxid": "511487", "organism_name": "Brevibacillus fluminis", "infraspecific_name": "strain=JCM 15716", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/04", "asm_name": "ASM371082v1", "asm_submitter": "NCAUR-ARS-USDA", "gbrs_paired_asm": "GCA_003710825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/710/825/GCF_003710825.1_ASM371082v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6456133", "genome_size_ungapped": "6456133", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "98", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003710825.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "6203", "protein_coding_gene_count": "5987", "non_coding_gene_count": "141", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-04", "dateModified": "2018-11-04", "datePublished": "2018-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacillus fluminis" ], "sample_taxid": [ "511487" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.841 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6456133", "Number of Sequences": "98", "Longest Sequences (bp)": "759148", "N50 (bp)": "250000", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.4", "Number of CDSs": "6047", "Average Protein Length": "310.8", "Coding Ratio (%)": "87.3", "Number of rRNAs": "2", "Number of tRNAs": "122", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacillus fluminis", "strain": "strain=JCM 15716", "accession": "GCA_003710825.1", "taxid": 511487, "species_taxid": 511487, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2119, "total_fragments": 2120, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevibacillus nitrificans", "strain": "strain=JCM 15774", "accession": "GCA_003710965.1", "taxid": 651560, "species_taxid": 651560, "relation_to_type": "type", "validated": true, "ani": 77.6396, "matched_fragments": 228, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus centrosporus", "strain": "strain=NRRL NRS 664", "accession": "GCA_003710815.1", "taxid": 54910, "species_taxid": 54910, "relation_to_type": "type", "validated": true, "ani": 77.6157, "matched_fragments": 217, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus migulae", "strain": "strain=CFH S0501", "accession": "GCA_004521915.1", "taxid": 1644114, "species_taxid": 1644114, "relation_to_type": "type", "validated": true, "ani": 77.4064, "matched_fragments": 206, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus gelatini", "strain": "strain=DSM 100115", "accession": "GCA_003710935.1", "taxid": 1655277, "species_taxid": 1655277, "relation_to_type": "type", "validated": true, "ani": 77.2753, "matched_fragments": 204, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus centrosporus", "strain": "strain=NBRC 15540", "accession": "GCA_006540045.1", "taxid": 54910, "species_taxid": 54910, "relation_to_type": "type", "validated": true, "ani": 77.2142, "matched_fragments": 211, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus composti", "strain": "strain=FJAT-54423", "accession": "GCA_016406105.1", "taxid": 2796470, "species_taxid": 2796470, "relation_to_type": "type", "validated": true, "ani": 77.1892, "matched_fragments": 179, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NRRL NRS 605", "accession": "GCA_003710905.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 77.1606, "matched_fragments": 274, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus parabrevis", "strain": "strain=NBRC 12334", "accession": "GCA_006539065.1", "taxid": 54914, "species_taxid": 54914, "relation_to_type": "type", "validated": true, "ani": 76.9566, "matched_fragments": 266, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus marinus", "strain": "strain=SCSIO 07484", "accession": "GCA_003963515.1", "taxid": 2496837, "species_taxid": 2496837, "relation_to_type": "type", "validated": true, "ani": 76.7457, "matched_fragments": 127, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 76.2708, "matched_fragments": 60, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus glycinis", "strain": "strain=T1", "accession": "GCA_009909185.1", "taxid": 2697035, "species_taxid": 2697035, "relation_to_type": "type", "validated": true, "ani": 76.0309, "matched_fragments": 62, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus cymbidii", "strain": "strain=R196", "accession": "GCA_004764705.1", "taxid": 1639034, "species_taxid": 1639034, "relation_to_type": "type", "validated": true, "ani": 75.8023, "matched_fragments": 53, "total_fragments": 2120, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003710825.1", 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