{
    "type": "genome",
    "identifier": "GCF_003710965.1",
    "organism": "Brevibacillus nitrificans",
    "title": "Brevibacillus nitrificans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "NCAUR-ARS-USDA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003710965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10331152",
        "wgs_master": "RHHU00000000.1",
        "refseq_category": "reference genome",
        "taxid": "651560",
        "species_taxid": "651560",
        "organism_name": "Brevibacillus nitrificans",
        "infraspecific_name": "strain=JCM 15774",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/11/04",
        "asm_name": "ASM371096v1",
        "asm_submitter": "NCAUR-ARS-USDA",
        "gbrs_paired_asm": "GCA_003710965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/710/965/GCF_003710965.1_ASM371096v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6330991",
        "genome_size_ungapped": "6330991",
        "gc_percent": "50.500000",
        "replicon_count": "0",
        "scaffold_count": "40",
        "contig_count": "40",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003710965.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "6168",
        "protein_coding_gene_count": "5978",
        "non_coding_gene_count": "150",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-11-04",
    "dateModified": "2018-11-04",
    "datePublished": "2018-11-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brevibacillus nitrificans"
        ],
        "sample_taxid": [
            "651560"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.807 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6330991",
        "Number of Sequences": "40",
        "Longest Sequences (bp)": "1614026",
        "N50 (bp)": "395975",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.5",
        "Number of CDSs": "6064",
        "Average Protein Length": "307.9",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "128",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2088,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
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                "accession": "GCA_006540045.1",
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                "species_taxid": 54910,
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                "validated": true,
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                "matched_fragments": 1686,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Brevibacillus centrosporus",
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                "species_taxid": 54910,
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                "status": "inconclusive"
            },
            {
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                "species_taxid": 54911,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus agri",
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                "accession": "GCA_006540025.1",
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                "species_taxid": 51101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6989,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus brevis",
                "strain": "strain=NCTC2611",
                "accession": "GCA_900637055.1",
                "taxid": 1393,
                "species_taxid": 1393,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.6481,
                "matched_fragments": 640,
                "total_fragments": 2092,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus parabrevis",
                "strain": "strain=NBRC 12334",
                "accession": "GCA_006539065.1",
                "taxid": 54914,
                "species_taxid": 54914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5881,
                "matched_fragments": 706,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus reuszeri",
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                "accession": "GCA_001187725.1",
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                "species_taxid": 54915,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus fortis",
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                "accession": "GCA_003013395.1",
                "taxid": 2126352,
                "species_taxid": 2126352,
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                "ani": 79.5529,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevibacillus marinus",
                "strain": "strain=SCSIO 07484",
                "accession": "GCA_003963515.1",
                "taxid": 2496837,
                "species_taxid": 2496837,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_003710815.1",
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            },
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            },
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                "status": "-"
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    "_bac2feature": {
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    "_genome_taxon": [
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        "nitrificans"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}