{ "type": "genome", "identifier": "GCF_003710985.1", "organism": "Brevibacillus panacihumi", "title": "Brevibacillus panacihumi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "NCAUR-ARS-USDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003710985.1", "bioproject": "PRJNA224116", "biosample": "SAMN10331151", "wgs_master": "RHHT00000000.1", "refseq_category": "reference genome", "taxid": "497735", "species_taxid": "497735", "organism_name": "Brevibacillus panacihumi", "infraspecific_name": "strain=JCM 15085", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/04", "asm_name": "ASM371098v1", "asm_submitter": "NCAUR-ARS-USDA", "gbrs_paired_asm": "GCA_003710985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/710/985/GCF_003710985.1_ASM371098v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5116160", "genome_size_ungapped": "5116160", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "99", "contig_count": "99", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003710985.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5118", "protein_coding_gene_count": "4925", "non_coding_gene_count": "130", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-04", "dateModified": "2018-11-04", "datePublished": "2018-11-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacillus panacihumi" ], "sample_taxid": [ "497735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], 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"status": "conclusive" }, { "organism_name": "Brevibacillus invocatus", "strain": "strain=JCM 12215", "accession": "GCA_003710915.1", "taxid": 173959, "species_taxid": 173959, "relation_to_type": "type", "validated": true, "ani": 80.9321, "matched_fragments": 819, "total_fragments": 1659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=NRRL NRS 1219", "accession": "GCA_003710885.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 79.0944, "matched_fragments": 508, "total_fragments": 1659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus agri", "strain": "strain=DSM 6348", "accession": "GCA_004117055.1", "taxid": 51101, "species_taxid": 51101, "relation_to_type": "type", "validated": true, "ani": 79.0875, "matched_fragments": 513, "total_fragments": 1659, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus 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"num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000503775.1", "gtdb_species": "s__Brevibacillus panacihumi_A", "ani": 94.5411, "matched_fragments": 1514, "total_fragments": 1659, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003710915.1", "gtdb_species": "s__Brevibacillus invocatus", "ani": 80.9241, "matched_fragments": 820, "total_fragments": 1659, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Brevibacillales;f__Brevibacillaceae;g__Brevibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Brevibacillus", "panacihumi" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }