{ "type": "genome", "identifier": "GCF_003713065.1", "organism": "Cohnella candidum", "title": "Cohnella candidum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Seoul Women's University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003713065.1", "bioproject": "PRJNA224116", "biosample": "SAMN10259933", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2674991", "species_taxid": "2674991", "organism_name": "Cohnella candidum", "infraspecific_name": "strain=18JY8-7", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/06", "asm_name": "ASM371306v1", "asm_submitter": "Seoul Women's University", "gbrs_paired_asm": "GCA_003713065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/713/065/GCF_003713065.1_ASM371306v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5289049", "genome_size_ungapped": "5289049", "gc_percent": "57.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003713065.1-RS_2024_03_31", "annotation_date": "2024-03-31", "total_gene_count": "4899", "protein_coding_gene_count": "4766", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-06", "dateModified": "2018-11-06", "datePublished": "2018-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella candidum" ], "sample_taxid": [ "2674991" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju" ], "sample_host_location_id": [], "data_size": "1.486 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5289049", "Number of Sequences": "1", "Longest Sequences (bp)": "5289049", "N50 (bp)": "5289049", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.0", "Number of CDSs": "4874", "Average Protein Length": "325.0", "Coding Ratio (%)": "89.9", "Number of rRNAs": "27", "Number of tRNAs": "61", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella candidum", "strain": "strain=18JY8-7", "accession": "GCA_003713065.1", "taxid": 2674991, "species_taxid": 2674991, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1763, "total_fragments": 1763, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cohnella pontilimi", "strain": "strain=CAU 1483", "accession": "GCA_005049045.1", "taxid": 2564100, "species_taxid": 2564100, "relation_to_type": "type", "validated": true, "ani": 79.1271, "matched_fragments": 501, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella faecalis", "strain": "strain=K2E09-144", "accession": "GCA_003570905.1", "taxid": 2315694, "species_taxid": 2315694, "relation_to_type": "type", "validated": true, "ani": 78.7177, "matched_fragments": 350, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella nanjingensis", "strain": "strain=DSM 28246", "accession": "GCA_014212125.1", "taxid": 1387779, "species_taxid": 1387779, "relation_to_type": "type", "validated": true, "ani": 78.6688, "matched_fragments": 466, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella xylanilytica", "strain": "strain=DSM 25239", "accession": "GCA_014212175.1", "taxid": 557555, "species_taxid": 557555, "relation_to_type": "type", "validated": true, "ani": 78.6447, "matched_fragments": 507, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella thermotolerans", "strain": "strain=DSM 17683", "accession": "GCA_000429825.1", "taxid": 329858, "species_taxid": 329858, "relation_to_type": "type", "validated": true, "ani": 78.5106, "matched_fragments": 437, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella panacarvi", "strain": "strain=Gsoil 349", "accession": "GCA_000515335.1", "taxid": 400776, "species_taxid": 400776, "relation_to_type": "type", "validated": true, "ani": 78.3674, "matched_fragments": 380, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella zeiphila", "strain": "strain=CBP-2801", "accession": "GCA_014212055.1", "taxid": 2761120, "species_taxid": 2761120, "relation_to_type": "type", "validated": true, "ani": 78.3289, "matched_fragments": 443, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": "strain=DSM 103658", "accession": "GCA_014212015.1", "taxid": 2163172, "species_taxid": 2163172, "relation_to_type": "type", "validated": true, "ani": 78.2456, "matched_fragments": 343, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": "strain=DSM 103658", "accession": "GCA_017874835.1", "taxid": 2163172, "species_taxid": 2163172, "relation_to_type": "type", "validated": true, "ani": 78.2342, "matched_fragments": 336, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albicereus", "strain": "strain=UniB2", "accession": "GCA_012676905.1", "taxid": 2726185, "species_taxid": 2726185, "relation_to_type": "type", "validated": true, "ani": 77.8773, "matched_fragments": 286, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella kolymensis", "strain": "strain=VKM B-2846", "accession": "GCA_000829465.1", "taxid": 1590652, "species_taxid": 1590652, "relation_to_type": "type", "validated": true, "ani": 77.4315, "matched_fragments": 244, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus artemisiicola", "strain": "strain=MWE-103", "accession": "GCA_017652985.1", "taxid": 1172618, "species_taxid": 1172618, "relation_to_type": "type", "validated": true, "ani": 77.3827, "matched_fragments": 376, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus macerans", "strain": "strain=ATCC 8244", "accession": "GCA_000746875.1", "taxid": 44252, "species_taxid": 44252, "relation_to_type": "type", "validated": true, "ani": 76.9507, "matched_fragments": 196, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus timonensis", "strain": "strain=DSM 16943", "accession": "GCA_022427145.1", "taxid": 225915, "species_taxid": 225915, "relation_to_type": "type", "validated": true, "ani": 76.8205, "matched_fragments": 165, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus oceani", "strain": "strain=IB182363", "accession": "GCA_014705615.1", "taxid": 2772510, "species_taxid": 2772510, "relation_to_type": "type", "validated": true, "ani": 76.4955, "matched_fragments": 159, "total_fragments": 1763, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003713065.1", "gtdb_species": "s__Cohnella candidum", "ani": 100.0, "matched_fragments": 1763, "total_fragments": 1763, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005049045.1", "gtdb_species": "s__Cohnella pontilimi", "ani": 79.1322, "matched_fragments": 500, "total_fragments": 1763, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003570905.1", "gtdb_species": "s__Cohnella faecalis", "ani": 78.7135, "matched_fragments": 349, "total_fragments": 1763, "gtdb_taxonomy": 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