{ "type": "genome", "identifier": "GCF_003716875.1", "organism": "Vibrio zhugei", "title": "Vibrio zhugei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hubei University of Arts and Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003716875.1", "bioproject": "PRJNA224116", "biosample": "SAMN10245970", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2479546", "species_taxid": "2479546", "organism_name": "Vibrio zhugei", "infraspecific_name": "strain=HBUAS61001", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/07", "asm_name": "ASM371687v1", "asm_submitter": "Hubei University of Arts and Science", "gbrs_paired_asm": "GCA_003716875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/716/875/GCF_003716875.1_ASM371687v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4009379", "genome_size_ungapped": "4009379", "gc_percent": "45.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003716875.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "3730", "protein_coding_gene_count": "3517", "non_coding_gene_count": "143", "pubmed_id": "30801241" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-07", "dateModified": "2018-11-07", "datePublished": "2018-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio zhugei" ], "sample_taxid": [ "2479546" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.138 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4009379", "Number of Sequences": "2", "Longest Sequences (bp)": "2901449", "N50 (bp)": "2901449", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.4", "Number of CDSs": "3616", "Average Protein Length": "314.5", "Coding Ratio (%)": "85.1", "Number of rRNAs": "28", "Number of tRNAs": "112", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio zhugei", "strain": "strain=HBUAS61001", "accession": "GCA_003716875.1", "taxid": 2479546, "species_taxid": 2479546, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1335, "total_fragments": 1336, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio zhugei", "strain": "strain=KCTC 62784", "accession": "GCA_024347155.1", "taxid": 2479546, "species_taxid": 2479546, "relation_to_type": "type", "validated": true, "ani": 99.9963, "matched_fragments": 1334, "total_fragments": 1336, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio palustris", "strain": "strain=CECT 9027", "accession": "GCA_024346995.1", "taxid": 1918946, "species_taxid": 1918946, "relation_to_type": "type", "validated": true, "ani": 82.6296, "matched_fragments": 787, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio palustris", "strain": "strain=CECT 9027", "accession": "GCA_900162645.1", "taxid": 1918946, "species_taxid": 1918946, "relation_to_type": "type", "validated": true, "ani": 82.3746, "matched_fragments": 769, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nitrifigilis", 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654686, "species_taxid": 654686, "relation_to_type": "type", "validated": true, "ani": 79.4925, "matched_fragments": 179, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio algicola", "strain": "strain=SM1977", "accession": "GCA_009601765.2", "taxid": 2662262, "species_taxid": 2662262, "relation_to_type": "type", "validated": true, "ani": 79.2785, "matched_fragments": 148, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hangzhouensis", "strain": "strain=CGMCC 1.7062", "accession": "GCA_900107935.1", "taxid": 462991, "species_taxid": 462991, "relation_to_type": "type", "validated": true, "ani": 78.6272, "matched_fragments": 153, "total_fragments": 1336, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", 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