{
    "type": "genome",
    "identifier": "GCF_003718735.1",
    "organism": "Staphylococcus debuckii",
    "title": "Staphylococcus debuckii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Calgary",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003718735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07634888",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2044912",
        "species_taxid": "2044912",
        "organism_name": "Staphylococcus debuckii",
        "infraspecific_name": "strain=SDB 2975",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/11/08",
        "asm_name": "ASM371873v1",
        "asm_submitter": "University of Calgary",
        "gbrs_paired_asm": "GCA_003718735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/718/735/GCF_003718735.1_ASM371873v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2691850",
        "genome_size_ungapped": "2691850",
        "gc_percent": "36.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003718735.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2614",
        "protein_coding_gene_count": "2488",
        "non_coding_gene_count": "84",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-11-08",
    "dateModified": "2018-11-08",
    "datePublished": "2018-11-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Staphylococcus debuckii"
        ],
        "sample_taxid": [
            "2044912"
        ],
        "sample_host_organism": [
            "Bos taurus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Quebec"
        ],
        "sample_host_location_id": [],
        "data_size": "0.757 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 9.72,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2691850",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2691850",
        "N50 (bp)": "2691850",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.6",
        "Number of CDSs": "2583",
        "Average Protein Length": "296.5",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "18",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Staphylococcus debuckii",
                "strain": "strain=SDB 2975",
                "accession": "GCA_003718735.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 896,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Staphylococcus piscifermentans",
                "strain": "strain=NCTC13836",
                "accession": "GCA_900186985.1",
                "taxid": 70258,
                "species_taxid": 70258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.7141,
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                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_003970555.1",
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                "matched_fragments": 735,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus carnosus",
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                "accession": "GCA_900458435.1",
                "taxid": 1281,
                "species_taxid": 1281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.238,
                "matched_fragments": 699,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus condimenti",
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                "accession": "GCA_001618885.1",
                "taxid": 70255,
                "species_taxid": 70255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1874,
                "matched_fragments": 717,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus condimenti",
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                "accession": "GCA_900637235.1",
                "taxid": 70255,
                "species_taxid": 70255,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1711,
                "matched_fragments": 718,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus carnosus",
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                "accession": "GCA_016028275.1",
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                "species_taxid": 1281,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.1384,
                "matched_fragments": 716,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Staphylococcus schleiferi",
                "strain": "strain=NCTC12218",
                "accession": "GCA_900458895.2",
                "taxid": 1295,
                "species_taxid": 1295,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5637,
                "matched_fragments": 147,
                "total_fragments": 897,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 9.72,
            "strain_heterogeneity": 100.0
        },
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            {
                "accession": "GCF_003718735.1",
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                "matched_fragments": 895,
                "total_fragments": 897,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900186985.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900458435.1",
                "gtdb_species": "s__Staphylococcus carnosus",
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                "matched_fragments": 699,
                "total_fragments": 897,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
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            },
            {
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            },
            {
                "accession": "GCF_002902285.1",
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            },
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                "accession": "GCF_003019275.1",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.029,
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    "_genome_taxon": [
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        "debuckii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}