{ "type": "genome", "identifier": "GCF_003719825.1", "organism": "Montanilutibacter psychrotolerans", "title": "Montanilutibacter psychrotolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Lanzhou university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003719825.1", "bioproject": "PRJNA224116", "biosample": "SAMN10369962", "wgs_master": "RIBS00000000.1", "refseq_category": "reference genome", "taxid": "1327343", "species_taxid": "1327343", "organism_name": "Montanilutibacter psychrotolerans", "infraspecific_name": "strain=ZS60", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/11", "asm_name": "ASM371982v1", "asm_submitter": "Lanzhou university", "gbrs_paired_asm": "GCA_003719825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/719/825/GCF_003719825.1_ASM371982v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3910744", "genome_size_ungapped": "3910744", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003719825.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3386", "protein_coding_gene_count": "3282", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-11", "dateModified": "2018-11-11", "datePublished": "2018-11-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Montanilutibacter psychrotolerans" ], "sample_taxid": [ "1327343" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xinjiang, Tianshan Mountain" ], "sample_host_location_id": [], "data_size": "1.062 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3910744", "Number of Sequences": "19", "Longest Sequences (bp)": "860631", "N50 (bp)": "534630", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "3359", "Average Protein Length": "339.4", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter psychrotolerans", "strain": "strain=ZS60", "accession": "GCA_003719825.1", "taxid": 1327343, "species_taxid": 1327343, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1294, "total_fragments": 1295, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 82.2928, "matched_fragments": 603, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 82.2221, "matched_fragments": 764, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 82.1662, "matched_fragments": 651, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 82.108, "matched_fragments": 707, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 82.0625, "matched_fragments": 692, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter prati", "strain": "strain=SYSU H10001", "accession": "GCA_009765215.1", "taxid": 2596704, "species_taxid": 2596704, "relation_to_type": "type", "validated": true, "ani": 82.0555, "matched_fragments": 671, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 81.9807, "matched_fragments": 694, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter ruishenii", "strain": "strain=CGMCC 1.10136", "accession": "GCA_007830115.1", "taxid": 686800, "species_taxid": 686800, "relation_to_type": "type", "validated": true, "ani": 81.7732, "matched_fragments": 610, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter niastensis", "strain": "strain=DSM 18481", "accession": "GCA_015453285.1", "taxid": 380629, "species_taxid": 380629, "relation_to_type": "type", "validated": true, "ani": 81.7425, "matched_fragments": 682, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter maris", "strain": "strain=KCTC 42381", "accession": "GCA_006546735.2", "taxid": 1605891, "species_taxid": 1605891, "relation_to_type": "type", "validated": true, "ani": 81.58, "matched_fragments": 620, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter luteus", "strain": "strain=CECT 30171", "accession": "GCA_907164845.1", "taxid": 2822368, "species_taxid": 2822368, "relation_to_type": "type", "validated": true, "ani": 81.4604, "matched_fragments": 597, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter soli", "strain": "strain=KCTC 22011", "accession": "GCA_003382285.1", "taxid": 453783, "species_taxid": 453783, "relation_to_type": "type", "validated": true, "ani": 81.4547, "matched_fragments": 670, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter antibioticus", "strain": "strain=ATCC 29479", "accession": "GCA_001442535.1", "taxid": 84531, "species_taxid": 84531, "relation_to_type": "type", "validated": true, "ani": 81.3665, "matched_fragments": 759, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter concretionis", "strain": "strain=Ko07", "accession": "GCA_000768345.1", "taxid": 262325, "species_taxid": 262325, "relation_to_type": "type", "validated": true, "ani": 81.3647, "matched_fragments": 568, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 81.3375, "matched_fragments": 794, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter chinensis", "strain": "strain=TLK-CK17", "accession": "GCA_021725675.1", "taxid": 2912247, "species_taxid": 2912247, "relation_to_type": "type", "validated": true, "ani": 81.0809, "matched_fragments": 673, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter aestuarii", "strain": "strain=JCM 31130", "accession": "GCA_006546775.1", "taxid": 1706195, "species_taxid": 1706195, "relation_to_type": "type", "validated": true, "ani": 80.9353, "matched_fragments": 602, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter defluvii", "strain": "strain=IMMIB APB-9", "accession": "GCA_000769985.1", "taxid": 391738, "species_taxid": 391738, "relation_to_type": "type", "validated": true, "ani": 80.7553, "matched_fragments": 394, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiicola", "strain": "strain=DSM 21749", "accession": "GCA_900167055.1", "taxid": 435289, "species_taxid": 435289, "relation_to_type": "type", "validated": true, "ani": 80.6604, "matched_fragments": 546, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter defluvii", "strain": "strain=DSM 18482", "accession": "GCA_000423325.1", "taxid": 391738, "species_taxid": 391738, "relation_to_type": "type", "validated": true, "ani": 80.5318, "matched_fragments": 490, "total_fragments": 1295, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003719825.1", "gtdb_species": "s__Lysobacter psychrotolerans", "ani": 100.0, "matched_fragments": 1294, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000768335.1", "gtdb_species": "s__Lysobacter arseniciresistens", "ani": 82.3054, "matched_fragments": 602, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003586305.1", "gtdb_species": "s__Lysobacter tabacisoli", "ani": 82.2719, "matched_fragments": 704, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001428685.1", "gtdb_species": "s__Lysobacter sp001428685", "ani": 82.1937, "matched_fragments": 798, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016613475.2", "gtdb_species": "s__Lysobacter arenosi", "ani": 82.1192, "matched_fragments": 706, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114355.1", "gtdb_species": "s__Lysobacter sp900114355", "ani": 82.0867, "matched_fragments": 807, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003814555.1", "gtdb_species": "s__Lysobacter tengchongensis", "ani": 82.0508, "matched_fragments": 694, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009765215.1", "gtdb_species": "s__Lysobacter prati", "ani": 82.0443, "matched_fragments": 672, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001429785.1", "gtdb_species": "s__Lysobacter sp001429785", "ani": 82.0356, "matched_fragments": 804, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.45", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_013361435.1", "gtdb_species": "s__Lysobacter sp013361435", "ani": 81.9107, "matched_fragments": 703, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016735495.2", "gtdb_species": "s__Lysobacter sp016735495", "ani": 81.8465, "matched_fragments": 691, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007830115.1", "gtdb_species": "s__Lysobacter ruishenii", "ani": 81.7856, "matched_fragments": 609, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001830245.1", "gtdb_species": "s__Lysobacter sp001830245", "ani": 81.7606, "matched_fragments": 585, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.71", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015453285.1", "gtdb_species": "s__Lysobacter niastensis", "ani": 81.7511, "matched_fragments": 681, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001442515.1", "gtdb_species": "s__Lysobacter enzymogenes_B", "ani": 81.6966, "matched_fragments": 811, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "95.70", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_006546735.2", "gtdb_species": "s__Lysobacter maris", "ani": 81.5742, "matched_fragments": 620, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000731095.1", "gtdb_species": "s__Lysobacter antibioticus_B", "ani": 81.4875, "matched_fragments": 750, "total_fragments": 1295, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003382285.1", "gtdb_species": "s__Lysobacter soli", "ani": 81.4857, "matched_fragments": 667, "total_fragments": 1295, "gtdb_taxonomy": 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"vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Montanilutibacter", "psychrotolerans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }