{ "tc_result": [ { "organism_name": "Acidithiobacillus sulfuriphilus", "strain": "strain=CJ-2", "accession": "GCA_003721225.1", "taxid": 1867749, "species_taxid": 1867749, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 825, "total_fragments": 843, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acidithiobacillus ferrooxidans", "strain": "strain=ATCC 23270", "accession": "GCA_000021485.1", "taxid": 920, "species_taxid": 920, "relation_to_type": "type", "validated": true, "ani": 80.5111, "matched_fragments": 256, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidithiobacillus ferridurans", "strain": "strain=JCM 18981", "accession": "GCA_003966655.1", "taxid": 1232575, "species_taxid": 1232575, "relation_to_type": "type", "validated": true, "ani": 79.8793, "matched_fragments": 254, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidithiobacillus ferrianus", "strain": "strain=MG", "accession": "GCA_010378095.1", "taxid": 2678518, "species_taxid": 2678518, "relation_to_type": "type", "validated": true, "ani": 78.4758, "matched_fragments": 223, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidithiobacillus thiooxidans", "strain": "strain=ATCC 19377", "accession": "GCA_000227215.2", "taxid": 930, "species_taxid": 930, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2531, "matched_fragments": 109, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidithiobacillus caldus", "strain": "strain=ATCC 51756", "accession": "GCA_000175575.2", "taxid": 33059, "species_taxid": 33059, "relation_to_type": "type", "validated": true, "ani": 77.7867, "matched_fragments": 168, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidithiobacillus caldus", "strain": "strain=DSM 8584", "accession": "GCA_018853615.1", "taxid": 33059, "species_taxid": 33059, "relation_to_type": "type", "validated": true, "ani": 77.689, "matched_fragments": 162, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermithiobacillus tepidarius", "strain": "strain=DSM 3134", "accession": "GCA_000423825.1", "taxid": 929, "species_taxid": 929, "relation_to_type": "type", "validated": true, "ani": 77.3444, "matched_fragments": 125, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidithiobacillus thiooxidans", "strain": "strain=ATCC 19377", "accession": "GCA_006718285.1", "taxid": 930, "species_taxid": 930, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2146, "matched_fragments": 110, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidithiobacillus thiooxidans", "strain": "strain=ATCC 19377", "accession": "GCA_009662475.1", "taxid": 930, "species_taxid": 930, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0218, "matched_fragments": 107, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 76.3438, "matched_fragments": 73, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalospira halophila", "strain": "strain=HL 3", "accession": "GCA_900112605.1", "taxid": 381300, "species_taxid": 381300, "relation_to_type": "type", "validated": true, "ani": 76.1971, "matched_fragments": 51, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella pseudohinzii", "strain": "strain=8-296-03", "accession": "GCA_000657795.2", "taxid": 1331258, "species_taxid": 1331258, "relation_to_type": "type", "validated": true, "ani": 75.7143, "matched_fragments": 50, "total_fragments": 843, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.62, "contamination": 0.38, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003721225.1", "gtdb_species": "s__Acidithiobacillus_B sulfuriphilus", "ani": 100.0, "matched_fragments": 825, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000021485.1", "gtdb_species": "s__Acidithiobacillus ferrooxidans", "ani": 80.5111, "matched_fragments": 256, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.73", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_018854495.1", "gtdb_species": "s__Acidithiobacillus ferrooxidans_C", "ani": 79.9577, "matched_fragments": 243, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003966655.1", "gtdb_species": "s__Acidithiobacillus ferridurans", "ani": 79.8949, "matched_fragments": 254, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "97.49", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_018853935.1", "gtdb_species": "s__Acidithiobacillus ferrivorans", "ani": 79.2031, "matched_fragments": 198, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.71", "min_intra_species_af": "0.67", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_010378095.1", "gtdb_species": "s__Acidithiobacillus ferrianus", "ani": 78.4585, "matched_fragments": 224, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000175575.2", "gtdb_species": "s__Acidithiobacillus_A caldus", "ani": 77.7867, "matched_fragments": 168, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_018853815.1", "gtdb_species": "s__Acidithiobacillus sp018853815", "ani": 77.6192, "matched_fragments": 98, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018854025.1", "gtdb_species": "s__UBA2486 sp018854025", "ani": 77.4076, "matched_fragments": 122, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__UBA2486", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000423825.1", "gtdb_species": "s__Thermithiobacillus tepidarius", "ani": 77.3681, "matched_fragments": 124, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Thermithiobacillaceae;g__Thermithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002847505.1", "gtdb_species": "s__Acidithiobacillus sp002847505", "ani": 77.281, "matched_fragments": 120, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018853465.1", "gtdb_species": "s__Acidithiobacillus sp018853465", "ani": 77.1901, "matched_fragments": 127, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "99.74", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009662475.1", "gtdb_species": "s__Acidithiobacillus thiooxidans", "ani": 77.0259, "matched_fragments": 106, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.70", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCA_019136395.1", "gtdb_species": "s__M0108 sp019136395", "ani": 76.5705, "matched_fragments": 53, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112605.1", "gtdb_species": "s__Thiohalospira halophila", "ani": 76.1971, "matched_fragments": 51, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiohalospirales;f__Thiohalospiraceae;g__Thiohalospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018435665.1", "gtdb_species": "s__M0108 sp018435665", "ani": 75.8956, "matched_fragments": 55, "total_fragments": 843, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__M0108", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" } ] }