{ "type": "genome", "identifier": "GCF_003721245.1", "organism": "Marinomonas hwangdonensis", "title": "Marinomonas hwangdonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shanghai Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003721245.1", "bioproject": "PRJNA224116", "biosample": "SAMN10284718", "wgs_master": "RIZG00000000.1", "refseq_category": "reference genome", "taxid": "1053647", "species_taxid": "1053647", "organism_name": "Marinomonas hwangdonensis", "infraspecific_name": "strain=HDW-15", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/11", "asm_name": "ASM372124v1", "asm_submitter": "Shanghai Ocean University", "gbrs_paired_asm": "GCA_003721245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/721/245/GCF_003721245.1_ASM372124v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3456993", "genome_size_ungapped": "3456993", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003721245.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "3183", "protein_coding_gene_count": "3092", "non_coding_gene_count": "78", "pubmed_id": "22021582" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-11", "dateModified": "2018-11-11", "datePublished": "2018-11-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinomonas hwangdonensis" ], "sample_taxid": [ "1053647" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yellow Sea" ], "sample_host_location_id": [], "data_size": "0.988 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3456993", "Number of Sequences": "25", "Longest Sequences (bp)": "662722", "N50 (bp)": "539763", "Gap Ratio (%)": "0.000521", "GCcontent (%)": "45.0", "Number of CDSs": "3088", "Average Protein Length": "333.4", "Coding Ratio (%)": "89.3", "Number of rRNAs": "2", "Number of tRNAs": "72", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinomonas hwangdonensis", "strain": "strain=HDW-15", "accession": "GCA_003721245.1", "taxid": 1053647, "species_taxid": 1053647, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1137, "total_fragments": 1139, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinomonas arctica", "strain": "strain=CGMCC 1.6498", "accession": "GCA_014645175.1", "taxid": 383750, "species_taxid": 383750, "relation_to_type": "type", "validated": true, "ani": 83.5024, "matched_fragments": 635, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas arctica", "strain": "strain=328", "accession": "GCA_003259225.1", "taxid": 383750, "species_taxid": 383750, "relation_to_type": "type", "validated": true, "ani": 83.48, "matched_fragments": 647, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas polaris", "strain": "strain=DSM 16579", "accession": "GCA_900129155.1", "taxid": 293552, "species_taxid": 293552, "relation_to_type": "type", "validated": true, "ani": 82.0004, "matched_fragments": 654, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas shanghaiensis", "strain": "strain=DSL-35", "accession": "GCA_003259175.1", "taxid": 2202418, "species_taxid": 2202418, "relation_to_type": "type", "validated": true, "ani": 81.4399, "matched_fragments": 604, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas lutimaris", "strain": "strain=E165", "accession": "GCA_019426345.1", "taxid": 2846746, "species_taxid": 2846746, "relation_to_type": "type", "validated": true, "ani": 81.348, "matched_fragments": 604, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas foliarum", "strain": "strain=CECT 7731", "accession": "GCA_003337275.1", "taxid": 491950, "species_taxid": 491950, "relation_to_type": "type", "validated": true, "ani": 80.7473, "matched_fragments": 535, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinomonas 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