{ "type": "genome", "identifier": "GCF_003721415.1", "organism": "Micromonospora aurantiaca", "title": "Micromonospora aurantiaca", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Macau", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003721415.1", "bioproject": "PRJNA224116", "biosample": "SAMN10373778", "wgs_master": "RIBT00000000.1", "refseq_category": "na", "taxid": "47850", "species_taxid": "47850", "organism_name": "Micromonospora aurantiaca", "infraspecific_name": "strain=ATCC 27029", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/11", "asm_name": "ASM372141v1", "asm_submitter": "University of Macau", "gbrs_paired_asm": "GCA_003721415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/721/415/GCF_003721415.1_ASM372141v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7535519", "genome_size_ungapped": "7535519", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "170", "contig_count": "170", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003721415.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "6917", "protein_coding_gene_count": "6745", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-11", "dateModified": "2018-11-11", "datePublished": "2018-11-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora aurantiaca" ], "sample_taxid": [ "47850" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Macau" ], "sample_host_location_id": [], "data_size": "2.001 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7535519", "Number of Sequences": "170", "Longest Sequences (bp)": "709255", "N50 (bp)": "182197", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.6", "Number of CDSs": "6848", "Average Protein Length": "324.4", "Coding Ratio (%)": "88.5", "Number of rRNAs": "0", "Number of tRNAs": "75", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora aurantiaca", "strain": "strain=ATCC 27029", "accession": "GCA_003721415.1", "taxid": 47850, "species_taxid": 47850, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2440, "total_fragments": 2447, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora aurantiaca", "strain": "strain=ATCC 27029", "accession": "GCA_000145235.1", "taxid": 47850, "species_taxid": 47850, "relation_to_type": "type", "validated": true, "ani": 98.5907, "matched_fragments": 2124, "total_fragments": 2447, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora tulbaghiae", "strain": "strain=DSM 45142", "accession": "GCA_900091605.1", "taxid": 479978, "species_taxid": 479978, "relation_to_type": "type", "validated": true, "ani": 95.1635, "matched_fragments": 1877, "total_fragments": 2447, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Micromonospora marina", "strain": "strain=DSM 45555", "accession": "GCA_900091565.1", "taxid": 307120, "species_taxid": 307120, "relation_to_type": "type", "validated": true, "ani": 94.2784, "matched_fragments": 1692, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chalcea", "strain": "strain=DSM 43026", "accession": "GCA_002926165.1", "taxid": 1874, "species_taxid": 1874, "relation_to_type": "type", "validated": true, "ani": 93.7477, "matched_fragments": 1813, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sediminicola", "strain": "strain=DSM 45794", "accession": "GCA_900089585.1", "taxid": 946078, "species_taxid": 946078, "relation_to_type": "type", "validated": true, "ani": 89.7905, "matched_fragments": 1720, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora maritima", "strain": "", "accession": "GCA_902825405.1", "taxid": 986711, "species_taxid": 986711, "relation_to_type": "type", "validated": true, "ani": 89.6604, "matched_fragments": 1233, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 89.226, "matched_fragments": 1682, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humi", "strain": "strain=DSM 45647", "accession": "GCA_900090105.1", "taxid": 745366, "species_taxid": 745366, "relation_to_type": "type", "validated": true, "ani": 89.1473, "matched_fragments": 1693, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora terminaliae", "strain": "strain=DSM 101760", "accession": "GCA_009671205.1", "taxid": 1914461, "species_taxid": 1914461, "relation_to_type": "type", "validated": true, "ani": 87.3436, "matched_fragments": 1586, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora terminaliae", "strain": "strain=TMS7", "accession": "GCA_010671825.1", "taxid": 1914461, "species_taxid": 1914461, "relation_to_type": "type", "validated": true, "ani": 87.331, "matched_fragments": 1572, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora eburnea", "strain": "strain=DSM 44814", "accession": "GCA_900090225.1", "taxid": 227316, "species_taxid": 227316, "relation_to_type": "type", "validated": true, "ani": 85.911, "matched_fragments": 1452, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora viridifaciens", "strain": "strain=DSM 43909", "accession": "GCA_900091545.1", "taxid": 1881, "species_taxid": 1881, "relation_to_type": "type", "validated": true, "ani": 85.8723, "matched_fragments": 1414, "total_fragments": 2447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, 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