{
    "type": "genome",
    "identifier": "GCF_003721565.1",
    "organism": "Rufibacter immobilis",
    "title": "Rufibacter immobilis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "institute of microbiology,chinese academy of sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003721565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10386327",
        "wgs_master": "RJJE00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1348778",
        "species_taxid": "1348778",
        "organism_name": "Rufibacter immobilis",
        "infraspecific_name": "strain=MCC P1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/11/12",
        "asm_name": "ASM372156v1",
        "asm_submitter": "institute of microbiology,chinese academy of sciences",
        "gbrs_paired_asm": "GCA_003721565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/721/565/GCF_003721565.1_ASM372156v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4772155",
        "genome_size_ungapped": "4772004",
        "gc_percent": "51.500000",
        "replicon_count": "0",
        "scaffold_count": "17",
        "contig_count": "17",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003721565.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "3998",
        "protein_coding_gene_count": "3935",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-11-12",
    "dateModified": "2018-11-12",
    "datePublished": "2018-11-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rufibacter immobilis"
        ],
        "sample_taxid": [
            "1348778"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India: Pangong Lake"
        ],
        "sample_host_location_id": [],
        "data_size": "1.355 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 96.12,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4772155",
        "Number of Sequences": "17",
        "Longest Sequences (bp)": "1709883",
        "N50 (bp)": "1327667",
        "Gap Ratio (%)": "0.003164",
        "GCcontent (%)": "51.3",
        "Number of CDSs": "3925",
        "Average Protein Length": "342.9",
        "Coding Ratio (%)": "84.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rufibacter immobilis",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
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                "species_taxid": 2762756,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "species_taxid": 2595005,
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                "status": "below_threshold"
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rufibacter latericius",
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                "accession": "GCA_003721515.1",
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                "species_taxid": 2487040,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Rufibacter radiotolerans",
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            },
            {
                "organism_name": "Rufibacter tibetensis",
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                "ani": 79.8516,
                "matched_fragments": 784,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pontibacter aquaedesilientis",
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                "accession": "GCA_014773225.1",
                "taxid": 2766980,
                "species_taxid": 2766980,
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                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Pontibacter silvestris",
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Hymenobacter fodinae",
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                "accession": "GCA_004745825.1",
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                "relation_to_type": "type",
                "validated": true,
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                "status": "below_threshold"
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        ],
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}