{
    "type": "genome",
    "identifier": "GCF_003722355.1",
    "organism": "Methylocystis hirsuta",
    "title": "Methylocystis hirsuta",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Valladolid",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003722355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN09908883",
        "wgs_master": "QWDD00000000.1",
        "refseq_category": "reference genome",
        "taxid": "369798",
        "species_taxid": "369798",
        "organism_name": "Methylocystis hirsuta",
        "infraspecific_name": "strain=CSC1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/11/13",
        "asm_name": "ASM372235v1",
        "asm_submitter": "University of Valladolid",
        "gbrs_paired_asm": "GCA_003722355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/722/355/GCF_003722355.1_ASM372235v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4213043",
        "genome_size_ungapped": "4213043",
        "gc_percent": "62.500000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003722355.1-RS_2024_05_01",
        "annotation_date": "2024-05-01",
        "total_gene_count": "4179",
        "protein_coding_gene_count": "4040",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-11-13",
    "dateModified": "2018-11-13",
    "datePublished": "2018-11-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylocystis hirsuta"
        ],
        "sample_taxid": [
            "369798"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:California"
        ],
        "sample_host_location_id": [],
        "data_size": "1.166 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 8.33,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4213043",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "3776027",
        "N50 (bp)": "3776027",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.4",
        "Number of CDSs": "4178",
        "Average Protein Length": "288.9",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methylocystis hirsuta",
                "strain": "strain=CSC1",
                "accession": "GCA_003722355.1",
                "taxid": 369798,
                "species_taxid": 369798,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1400,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methylocystis silviterrae",
                "strain": "strain=FS",
                "accession": "GCA_013350005.1",
                "taxid": 2743612,
                "species_taxid": 2743612,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.1628,
                "matched_fragments": 1060,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylocystis rosea",
                "strain": "strain=SV97",
                "accession": "GCA_000372845.1",
                "taxid": 173366,
                "species_taxid": 173366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.2195,
                "matched_fragments": 1020,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylocystis parvus",
                "strain": "strain=OBBP",
                "accession": "GCA_000283235.1",
                "taxid": 134,
                "species_taxid": 134,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6992,
                "matched_fragments": 613,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylosinus trichosporium",
                "strain": "strain=OB3b",
                "accession": "GCA_000178815.2",
                "taxid": 426,
                "species_taxid": 426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9231,
                "matched_fragments": 533,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylosinus sporium",
                "strain": "strain=DSM 17706",
                "accession": "GCA_003113265.1",
                "taxid": 428,
                "species_taxid": 428,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8949,
                "matched_fragments": 488,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylosinus trichosporium",
                "strain": "strain=OB3b",
                "accession": "GCA_002752655.1",
                "taxid": 426,
                "species_taxid": 426,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8909,
                "matched_fragments": 537,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylocystis heyeri",
                "strain": "strain=H2",
                "accession": "GCA_004802635.2",
                "taxid": 391905,
                "species_taxid": 391905,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3722,
                "matched_fragments": 421,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylovirgula ligni",
                "strain": "strain=BW863",
                "accession": "GCA_004135935.1",
                "taxid": 569860,
                "species_taxid": 569860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7258,
                "matched_fragments": 223,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylovirgula ligni",
                "strain": "strain=BW863",
                "accession": "GCA_003387225.1",
                "taxid": 569860,
                "species_taxid": 569860,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6897,
                "matched_fragments": 221,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Candidatus Rhodoblastus alkanivorans",
                "strain": "",
                "accession": "GCA_022760755.1",
                "taxid": 2954117,
                "species_taxid": 2954117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3437,
                "matched_fragments": 275,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium dankookense",
                "strain": "strain=DSM 22415",
                "accession": "GCA_022179165.1",
                "taxid": 560405,
                "species_taxid": 560405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6967,
                "matched_fragments": 227,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium gregans",
                "strain": "strain=NBRC 103626",
                "accession": "GCA_022179245.1",
                "taxid": 374424,
                "species_taxid": 374424,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6749,
                "matched_fragments": 206,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium oxalidis",
                "strain": "strain=DSM 24028",
                "accession": "GCA_022179505.1",
                "taxid": 944322,
                "species_taxid": 944322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6427,
                "matched_fragments": 225,
                "total_fragments": 1402,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 8.33,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003722355.1",
                "gtdb_species": "s__Methylocystis hirsuta",
                "ani": 100.0,
                "matched_fragments": 1398,
                "total_fragments": 1402,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.95",
                "min_intra_species_ani": "95.95",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013350005.1",
                "gtdb_species": "s__Methylocystis sp013350005",
                "ani": 94.1628,
                "matched_fragments": 1060,
                "total_fragments": 1402,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.16",
                "min_intra_species_ani": "96.16",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000304315.1",
                "gtdb_species": "s__Methylocystis sp000304315",
                "ani": 92.8027,
                "matched_fragments": 1050,
                "total_fragments": 1402,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000372845.1",
                "gtdb_species": "s__Methylocystis rosea",
                "ani": 92.2311,
                "matched_fragments": 1020,
                "total_fragments": 1402,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.62",
                "min_intra_species_ani": "95.24",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_015709515.1",
                "gtdb_species": "s__Methylocystis sp015709515",
                "ani": 92.1488,
                "matched_fragments": 1050,
                "total_fragments": 1402,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_015709525.1",
                "gtdb_species": "s__Methylocystis sp015709525",
                "ani": 92.114,
                "matched_fragments": 1026,
                "total_fragments": 1402,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009773555.1",
                "gtdb_species": "s__Methylocystis sp009773555",
                "ani": 92.0997,
                "matched_fragments": 1003,
                "total_fragments": 1402,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.69",
                "min_intra_species_ani": "99.47",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016869595.1",
                "gtdb_species": "s__Methylocystis sp016869595",
                "ani": 85.3297,
                "matched_fragments": 824,
                "total_fragments": 1402,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016869435.1",
                "gtdb_species": "s__Methylocystis sp016869435",
                "ani": 85.2077,
                "matched_fragments": 773,
                "total_fragments": 1402,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylocystis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.347,
        "cell_length": -0.071,
        "doubling_h": 2.05,
        "growth_tmp": 26.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.0,
        "genome_size": 4365310.833,
        "gc_content": 63.148,
        "coding_genes": 4276.5,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.666,
        "coccus_cell_shape": 0.333,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methylocystis",
        "hirsuta"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}