{ "type": "genome", "identifier": "GCF_003725545.1", "organism": "Micromonospora solifontis", "title": "Micromonospora solifontis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "King Mongkut's Institute of Technology Ladkrabang", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003725545.1", "bioproject": "PRJNA224116", "biosample": "SAMN10388287", "wgs_master": "RJLN00000000.1", "refseq_category": "reference genome", "taxid": "2487138", "species_taxid": "2487138", "organism_name": "Micromonospora solifontis", "infraspecific_name": "strain=PPF5-17", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/13", "asm_name": "ASM372554v1", "asm_submitter": "King Mongkut's Institute of Technology Ladkrabang", "gbrs_paired_asm": "GCA_003725545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/725/545/GCF_003725545.1_ASM372554v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5908624", "genome_size_ungapped": "5908624", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "227", "contig_count": "227", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003725545.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "5621", "protein_coding_gene_count": "5393", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-13", "dateModified": "2018-11-13", "datePublished": "2018-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora solifontis" ], "sample_taxid": [ "2487138" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand: Chiang Rai" ], "sample_host_location_id": [], "data_size": "1.568 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5908624", "Number of Sequences": "227", "Longest Sequences (bp)": "173625", "N50 (bp)": "59916", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.1", "Number of CDSs": "5391", "Average Protein Length": "316.8", "Coding Ratio (%)": "86.7", "Number of rRNAs": "2", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora auratinigra", "strain": "strain=DSM 44815", "accession": "GCA_900089595.1", "taxid": 261654, "species_taxid": 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"total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora halophytica", "strain": "strain=DSM 43171", "accession": "GCA_900090245.1", "taxid": 47864, "species_taxid": 47864, "relation_to_type": "type", "validated": true, "ani": 86.6275, "matched_fragments": 1282, "total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 86.35, "matched_fragments": 1023, "total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 85.4119, "matched_fragments": 1151, "total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora carbonacea", "strain": "strain=aurantiaca", "accession": "GCA_013389765.1", "taxid": 47853, "species_taxid": 47853, "relation_to_type": "type", "validated": true, "ani": 85.4091, "matched_fragments": 1289, "total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 85.3598, "matched_fragments": 1282, "total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=AM105", "accession": "GCA_001542325.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 85.3381, "matched_fragments": 1163, "total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", "accession": "GCA_900090265.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 85.3288, "matched_fragments": 1245, "total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora nigra", "strain": "strain=DSM 43818", "accession": "GCA_900091585.1", "taxid": 145857, "species_taxid": 145857, "relation_to_type": "type", "validated": true, "ani": 84.3984, "matched_fragments": 1181, "total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, "relation_to_type": "type", "validated": true, "ani": 83.9014, "matched_fragments": 1155, "total_fragments": 1870, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora 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