{ "type": "genome", "identifier": "GCF_003725695.1", "organism": "Nocardioides marmoriginsengisoli", "title": "Nocardioides marmoriginsengisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003725695.1", "bioproject": "PRJNA224116", "biosample": "SAMN10390306", "wgs_master": "RJSE00000000.1", "refseq_category": "reference genome", "taxid": "661483", "species_taxid": "661483", "organism_name": "Nocardioides marmoriginsengisoli", "infraspecific_name": "strain=Gsoil 097", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/13", "asm_name": "ASM372569v1", "asm_submitter": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "gbrs_paired_asm": "GCA_003725695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/725/695/GCF_003725695.1_ASM372569v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4457833", "genome_size_ungapped": "4456746", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003725695.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4414", "protein_coding_gene_count": "4341", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-13", "dateModified": "2018-11-13", "datePublished": "2018-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides marmoriginsengisoli" ], "sample_taxid": [ "661483" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Pocheon Province" ], "sample_host_location_id": [], "data_size": "1.186 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4457833", "Number of Sequences": "16", "Longest Sequences (bp)": "1682001", "N50 (bp)": "800088", "Gap Ratio (%)": "0.024406", "GCcontent (%)": "70.2", "Number of CDSs": "4360", "Average Protein Length": "318.4", "Coding Ratio (%)": "93.4", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marmoricola ginsengisoli", "strain": "strain=Gsoil 097", "accession": "GCA_003725695.1", "taxid": 661483, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 79.8034, "matched_fragments": 619, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 79.7686, "matched_fragments": 638, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides iriomotensis", "strain": "strain=NBRC 105384", "accession": "GCA_004168035.1", "taxid": 715784, "species_taxid": 715784, "relation_to_type": "type", "validated": true, "ani": 79.689, "matched_fragments": 608, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" 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"strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 79.4892, "matched_fragments": 607, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 79.1268, "matched_fragments": 569, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides alkalitolerans", "strain": "strain=DSM 16699", "accession": "GCA_000426525.1", "taxid": 281714, "species_taxid": 281714, "relation_to_type": "type", "validated": true, "ani": 78.8922, "matched_fragments": 561, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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