{ "type": "genome", "identifier": "GCF_003725775.1", "organism": "Nocardioides marmorisolisilvae", "title": "Nocardioides marmorisolisilvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003725775.1", "bioproject": "PRJNA224116", "biosample": "SAMN10390347", "wgs_master": "RJSG00000000.1", "refseq_category": "reference genome", "taxid": "1542737", "species_taxid": "1542737", "organism_name": "Nocardioides marmorisolisilvae", "infraspecific_name": "strain=KIS18-7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/13", "asm_name": "ASM372577v1", "asm_submitter": "Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences", "gbrs_paired_asm": "GCA_003725775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/725/775/GCF_003725775.1_ASM372577v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3828516", "genome_size_ungapped": "3827206", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003725775.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3894", "protein_coding_gene_count": "3821", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-13", "dateModified": "2018-11-13", "datePublished": "2018-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides marmorisolisilvae" ], "sample_taxid": [ "1542737" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Baengnyeong Island" ], "sample_host_location_id": [], "data_size": "1.022 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3828516", "Number of Sequences": "6", "Longest Sequences (bp)": "2341384", "N50 (bp)": "2341384", "Gap Ratio (%)": "0.034269", "GCcontent (%)": "69.6", "Number of CDSs": "3848", "Average Protein Length": "311.6", "Coding Ratio (%)": "94.0", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marmoricola solisilvae", "strain": "strain=KIS18-7", "accession": "GCA_003725775.1", "taxid": 1542737, 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"validated": true, "ani": 80.2005, "matched_fragments": 614, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 80.177, "matched_fragments": 587, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 80.1651, "matched_fragments": 587, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 80.0746, "matched_fragments": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 79.8682, "matched_fragments": 601, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 79.8596, "matched_fragments": 578, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 79.8171, "matched_fragments": 542, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 79.7648, "matched_fragments": 532, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides euryhalodurans", "strain": "strain=MMS17-SY117", "accession": "GCA_004564375.1", "taxid": 2518370, "species_taxid": 2518370, "relation_to_type": "type", "validated": true, "ani": 79.7145, "matched_fragments": 548, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides zhouii", "strain": "strain=HLT2-9", "accession": "GCA_004137345.1", "taxid": 1168729, "species_taxid": 1168729, "relation_to_type": "type", "validated": true, "ani": 79.6157, "matched_fragments": 539, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides 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