{ "type": "genome", "identifier": "GCF_003725955.1", "organism": "Slackia isoflavoniconvertens", "title": "Slackia isoflavoniconvertens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Max Rubner-Institut", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003725955.1", "bioproject": "PRJNA224116", "biosample": "SAMN09280233", "wgs_master": "QIBZ00000000.1", "refseq_category": "na", "taxid": "572010", "species_taxid": "572010", "organism_name": "Slackia isoflavoniconvertens", "infraspecific_name": "strain=DSM 22006", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/13", "asm_name": "ASM372595v1", "asm_submitter": "Max Rubner-Institut", "gbrs_paired_asm": "GCA_003725955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/725/955/GCF_003725955.1_ASM372595v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2253648", "genome_size_ungapped": "2253648", "gc_percent": "57.500000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003725955.1-RS_2024_04_25", "annotation_date": "2024-04-25", "total_gene_count": "1912", "protein_coding_gene_count": "1825", "non_coding_gene_count": "74", "pubmed_id": "30643901" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-13", "dateModified": "2018-11-13", "datePublished": "2018-11-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Slackia isoflavoniconvertens" ], "sample_taxid": [ "572010" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.637 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2253648", "Number of Sequences": "53", "Longest Sequences (bp)": "238938", "N50 (bp)": "162276", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.7", "Number of CDSs": "1884", "Average Protein Length": "334.8", "Coding Ratio (%)": "84.0", "Number of rRNAs": "5", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Slackia isoflavoniconvertens", "strain": "strain=DSM 22006", "accession": "GCA_003725955.1", "taxid": 572010, "species_taxid": 572010, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 728, 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