{ "type": "genome", "identifier": "GCF_003729955.1", "organism": "Chryseobacterium daecheongense", "title": "Chryseobacterium daecheongense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003729955.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421667", "wgs_master": "RJTX00000000.1", "refseq_category": "reference genome", "taxid": "192389", "species_taxid": "192389", "organism_name": "Chryseobacterium daecheongense", "infraspecific_name": "strain=DSM 15235", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/14", "asm_name": "ASM372995v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_003729955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/729/955/GCF_003729955.1_ASM372995v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3831316", "genome_size_ungapped": "3831316", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003729955.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3593", "protein_coding_gene_count": "3511", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-14", "dateModified": "2018-11-14", "datePublished": "2018-11-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium daecheongense" ], "sample_taxid": [ "192389" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.073 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3831316", "Number of Sequences": "7", "Longest Sequences (bp)": "1778186", "N50 (bp)": "983762", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.2", "Number of CDSs": "3489", "Average Protein Length": "328.6", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium daecheongense", "strain": "strain=DSM 15235", "accession": "GCA_003729955.1", "taxid": 192389, "species_taxid": 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true, "ani": 80.9041, "matched_fragments": 767, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium populi", "strain": "strain=CF314", "accession": "GCA_000282115.1", "taxid": 1144316, "species_taxid": 1144316, "relation_to_type": "type", "validated": true, "ani": 80.8471, "matched_fragments": 765, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.7408, "matched_fragments": 678, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oranimense", "strain": "strain=DSM 19055", "accession": "GCA_900129755.1", "taxid": 421058, "species_taxid": 421058, "relation_to_type": "type", "validated": true, "ani": 80.7371, "matched_fragments": 719, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 80.6734, "matched_fragments": 751, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium geocarposphaerae", "strain": "strain=DSM 27617", "accession": "GCA_002797535.1", "taxid": 1416776, "species_taxid": 1416776, "relation_to_type": "type", "validated": true, "ani": 80.5647, "matched_fragments": 731, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=DSM 27621", "accession": "GCA_900142615.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 80.5275, "matched_fragments": 733, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium contaminans", "strain": "strain=C-26", "accession": "GCA_001684955.1", "taxid": 1423959, "species_taxid": 1423959, "relation_to_type": "type", "validated": true, "ani": 80.4495, "matched_fragments": 681, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.4321, "matched_fragments": 695, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 80.3667, "matched_fragments": 751, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium paridis", "strain": "strain=YIM B02567", "accession": "GCA_016595215.1", "taxid": 2800328, "species_taxid": 2800328, "relation_to_type": "type", "validated": true, "ani": 79.9779, "matched_fragments": 686, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium phosphatilyticum", "strain": "strain=ISE14", "accession": "GCA_002899825.2", "taxid": 475075, "species_taxid": 475075, "relation_to_type": "type", "validated": true, "ani": 79.8998, "matched_fragments": 686, "total_fragments": 1273, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003729955.1", "gtdb_species": "s__Chryseobacterium daecheongense", "ani": 100.0, "matched_fragments": 1273, "total_fragments": 1273, "gtdb_taxonomy": 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