{ "type": "genome", "identifier": "GCF_003732545.1", "organism": "Salinisphaera halophila YIM 95161", "title": "Salinisphaera halophila YIM 95161", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003732545.1", "bioproject": "PRJNA224116", "biosample": "SAMN07961446", "wgs_master": "AYKF00000000.1", "refseq_category": "reference genome", "taxid": "1051139", "species_taxid": "1304158", "organism_name": "Salinisphaera halophila YIM 95161", "infraspecific_name": "strain=YIM 95161", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/15", "asm_name": "ASM373254v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_003732545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/732/545/GCF_003732545.1_ASM373254v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3791007", "genome_size_ungapped": "3791007", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "153", "contig_count": "153", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003732545.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3520", "protein_coding_gene_count": "3412", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-15", "dateModified": "2018-11-15", "datePublished": "2018-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinisphaera halophila YIM 95161" ], "sample_taxid": [ "1051139" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.042 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3791007", "Number of Sequences": "153", "Longest Sequences (bp)": "264988", "N50 (bp)": "63108", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "3385", "Average Protein Length": "316.2", "Coding Ratio (%)": "84.7", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinisphaera halophila", "strain": "strain=YIM 95161", "accession": "GCA_003732545.1", "taxid": 1304158, "species_taxid": 1304158, 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