{ "type": "genome", "identifier": "GCF_003751625.1", "organism": "Gallaecimonas pentaromativorans", "title": "Gallaecimonas pentaromativorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003751625.1", "bioproject": "PRJNA224116", "biosample": "SAMN10363320", "wgs_master": "RJUL00000000.1", "refseq_category": "reference genome", "taxid": "584787", "species_taxid": "584787", "organism_name": "Gallaecimonas pentaromativorans", "infraspecific_name": "strain=DSM 21945", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/15", "asm_name": "ASM375162v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003751625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/751/625/GCF_003751625.1_ASM375162v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4190752", "genome_size_ungapped": "4190507", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-11", "total_gene_count": "3984", "protein_coding_gene_count": "3870", "non_coding_gene_count": "84", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-15", "dateModified": "2018-11-15", "datePublished": "2018-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Gallaecimonas pentaromativorans" ], "sample_taxid": [ "584787" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.174 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4190752", "Number of Sequences": "21", "Longest Sequences (bp)": "600243", "N50 (bp)": "351615", "Gap Ratio (%)": "0.006085", "GCcontent (%)": "58.4", "Number of CDSs": "3922", "Average Protein Length": "323.3", "Coding Ratio (%)": "90.8", "Number of rRNAs": "3", "Number of tRNAs": "81", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gallaecimonas pentaromativorans", "strain": "strain=DSM 21945", "accession": "GCA_003751625.1", 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"matched_fragments": 198, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas aquatica", "strain": "strain=AE235", "accession": "GCA_000764655.1", "taxid": 558964, "species_taxid": 558964, "relation_to_type": "type", "validated": true, "ani": 76.9151, "matched_fragments": 175, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas enteropelogenes", "strain": "strain=FDAARGOS_1509", "accession": "GCA_020097315.1", "taxid": 29489, "species_taxid": 29489, "relation_to_type": "type", "validated": true, "ani": 76.8717, "matched_fragments": 184, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aeromonas enteropelogenes", "strain": "strain=CECT 4487", "accession": "GCA_000819845.1", "taxid": 29489, "species_taxid": 29489, "relation_to_type": "type", "validated": true, "ani": 76.8022, "matched_fragments": 180, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plesiomonas shigelloides", "strain": "strain=NCTC10360", "accession": "GCA_900087055.1", "taxid": 703, "species_taxid": 703, "relation_to_type": "type", "validated": true, "ani": 76.6712, "matched_fragments": 81, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrimonas sediminicola", "strain": "strain=IMCC35001", "accession": "GCA_005116715.1", "taxid": 2569538, "species_taxid": 2569538, "relation_to_type": "type", "validated": true, "ani": 76.5477, "matched_fragments": 161, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=FDAARGOS_877", "accession": "GCA_016028515.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 76.4978, "matched_fragments": 81, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 76.3491, "matched_fragments": 119, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 76.3072, "matched_fragments": 135, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrimonas senticii", "strain": "strain=DSM 18821", "accession": "GCA_000422665.1", "taxid": 394566, "species_taxid": 394566, "relation_to_type": "type", "validated": true, "ani": 76.1787, "matched_fragments": 83, "total_fragments": 1390, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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