{ "type": "genome", "identifier": "GCF_003752415.1", "organism": "Luteococcus japonicus", "title": "Luteococcus japonicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003752415.1", "bioproject": "PRJNA224116", "biosample": "SAMN10363107", "wgs_master": "RKHG00000000.1", "refseq_category": "reference genome", "taxid": "33984", "species_taxid": "33984", "organism_name": "Luteococcus japonicus", "infraspecific_name": "strain=DSM 10546", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/15", "asm_name": "ASM375241v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_003752415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/752/415/GCF_003752415.1_ASM375241v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3452849", "genome_size_ungapped": "3452849", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003752415.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "3344", "protein_coding_gene_count": "3206", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-15", "dateModified": "2018-11-15", "datePublished": "2018-11-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Luteococcus japonicus" ], "sample_taxid": [ "33984" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.938 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3452849", "Number of Sequences": "1", "Longest Sequences (bp)": "3452849", "N50 (bp)": "3452849", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "3326", "Average Protein Length": "313.4", "Coding Ratio (%)": "90.6", "Number of rRNAs": "9", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteococcus japonicus", "strain": "strain=DSM 10546", "accession": "GCA_003752415.1", "taxid": 33984, "species_taxid": 33984, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1148, "total_fragments": 1150, "ani_threshold": 95, 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"strain=16Sb5-5", "accession": "GCA_003327535.1", "taxid": 2268447, "species_taxid": 2268447, "relation_to_type": "type", "validated": true, "ani": 77.7393, "matched_fragments": 289, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 77.735, "matched_fragments": 213, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidipropionibacterium acidipropionici", "strain": "strain=DSM 4900", "accession": "GCA_000427845.1", "taxid": 1748, "species_taxid": 1748, "relation_to_type": "type", "validated": true, "ani": 77.6625, "matched_fragments": 273, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionibacterium acidifaciens", "strain": "strain=DSM 21887", "accession": "GCA_000426605.1", "taxid": 556499, "species_taxid": 556499, "relation_to_type": "type", "validated": true, "ani": 77.6542, "matched_fragments": 235, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 77.5449, "matched_fragments": 278, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava tarda", "strain": "strain=DSM 22130", "accession": "GCA_900182665.1", "taxid": 433330, "species_taxid": 433330, "relation_to_type": "type", "validated": true, "ani": 77.5326, "matched_fragments": 224, "total_fragments": 1150, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Granulicoccus phenolivorans", "strain": "strain=NBRC 107789", "accession": "GCA_001552335.1", "taxid": 266854, 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