{ "type": "genome", "identifier": "GCF_003795125.1", "organism": "Tetragenococcus osmophilus", "title": "Tetragenococcus osmophilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003795125.1", "bioproject": "PRJNA224116", "biosample": "SAMN08714450", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "526944", "species_taxid": "526944", "organism_name": "Tetragenococcus osmophilus", "infraspecific_name": "strain=JCM 31126", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/19", "asm_name": "ASM379512v1", "asm_submitter": "Chung-Ang University", "gbrs_paired_asm": "GCA_003795125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/795/125/GCF_003795125.1_ASM379512v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2384293", "genome_size_ungapped": "2384293", "gc_percent": "36.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003795125.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2303", "protein_coding_gene_count": "2158", "non_coding_gene_count": "80", "pubmed_id": "21357458" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-19", "dateModified": "2018-11-19", "datePublished": "2018-11-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Tetragenococcus osmophilus" ], "sample_taxid": [ "526944" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium: Flanders, Tienen" ], "sample_host_location_id": [], "data_size": "0.668 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2384293", "Number of Sequences": "3", "Longest Sequences (bp)": "2329167", "N50 (bp)": "2329167", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.3", "Number of CDSs": "2269", "Average Protein Length": "299.9", "Coding Ratio (%)": "85.6", "Number of rRNAs": "15", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tetragenococcus muriaticus", "strain": "strain=DSM 15685", "accession": "GCA_000423785.1", "taxid": 64642, "species_taxid": 64642, "relation_to_type": "type", "validated": true, "ani": 89.9043, "matched_fragments": 545, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tetragenococcus halophilus subsp. halophilus", "strain": "strain=DSM 20339", "accession": "GCA_003841405.1", "taxid": 1513897, "species_taxid": 51669, "relation_to_type": "type", "validated": true, "ani": 81.9189, "matched_fragments": 482, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tetragenococcus halophilus subsp. flandriensis", "strain": "strain=DSM 23766", "accession": "GCA_002922845.1", "taxid": 1513898, "species_taxid": 51669, "relation_to_type": "type", "validated": true, "ani": 81.4754, "matched_fragments": 424, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tetragenococcus koreensis", "strain": "strain=KCTC 3924", "accession": "GCA_003795145.1", "taxid": 290335, "species_taxid": 290335, "relation_to_type": "type", "validated": true, "ani": 81.139, "matched_fragments": 462, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tetragenococcus solitarius", "strain": "strain=NBRC 100494", "accession": "GCA_001544195.1", "taxid": 71453, "species_taxid": 71453, "relation_to_type": "type", "validated": true, "ani": 79.8296, "matched_fragments": 415, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000407165.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 77.97, "matched_fragments": 61, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus saccharolyticus subsp. saccharolyticus", "strain": "strain=ATCC 43076", "accession": "GCA_000407005.1", "taxid": 1814218, "species_taxid": 41997, "relation_to_type": "type", "validated": true, "ani": 77.8193, "matched_fragments": 126, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus aquimarinus", "strain": "strain=DSM 17690", "accession": "GCA_001885765.1", "taxid": 328396, "species_taxid": 328396, "relation_to_type": "type", "validated": true, "ani": 77.4877, "matched_fragments": 59, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alcedinis", "strain": "strain=CCM 8433", "accession": "GCA_014635985.1", "taxid": 1274384, "species_taxid": 1274384, "relation_to_type": "type", "validated": true, "ani": 77.1802, "matched_fragments": 52, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus saccharolyticus", "strain": "strain=DSM 20726", "accession": "GCA_001886235.1", "taxid": 41997, "species_taxid": 41997, "relation_to_type": "type", "validated": true, "ani": 77.036, "matched_fragments": 116, "total_fragments": 794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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