{ "type": "genome", "identifier": "GCF_003797835.1", "organism": "Kocuria soli", "title": "Kocuria soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research Center for Medicine & Biology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003797835.1", "bioproject": "PRJNA224116", "biosample": "SAMN10345596", "wgs_master": "RKMF00000000.1", "refseq_category": "reference genome", "taxid": "2485125", "species_taxid": "2485125", "organism_name": "Kocuria soli", "infraspecific_name": "strain=M5W7-7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/19", "asm_name": "ASM379783v1", "asm_submitter": "Research Center for Medicine & Biology", "gbrs_paired_asm": "GCA_003797835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/797/835/GCF_003797835.1_ASM379783v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2952089", "genome_size_ungapped": "2952089", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003797835.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2683", "protein_coding_gene_count": "2589", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-19", "dateModified": "2018-11-19", "datePublished": "2018-11-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Kocuria soli" ], "sample_taxid": [ "2485125" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Liaoning" ], "sample_host_location_id": [], "data_size": "0.813 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2952089", "Number of Sequences": "31", "Longest Sequences (bp)": "346156", "N50 (bp)": "187544", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "2654", "Average Protein Length": "335.1", "Coding Ratio (%)": "90.4", "Number of rRNAs": "4", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kocuria soli", "strain": "strain=M5W7-7", "accession": "GCA_003797835.1", "taxid": 2485125, "species_taxid": 2485125, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 961, "total_fragments": 966, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kocuria coralli", "strain": "strain=SCSIO 13007", "accession": "GCA_008831305.1", "taxid": 1461025, "species_taxid": 1461025, "relation_to_type": "type", "validated": true, "ani": 81.4092, "matched_fragments": 561, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria subflava", "strain": "strain=YIM 13062", "accession": "GCA_012163155.1", "taxid": 1736139, "species_taxid": 1736139, "relation_to_type": "type", "validated": true, "ani": 81.0312, "matched_fragments": 535, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria palustris", "strain": "strain=TAGA27", "accession": "GCA_016907795.1", "taxid": 71999, "species_taxid": 71999, "relation_to_type": "type", "validated": true, "ani": 80.0808, "matched_fragments": 438, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kocuria varians", "strain": 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78.8302, "matched_fragments": 370, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 78.0058, "matched_fragments": 200, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.7587, "matched_fragments": 147, "total_fragments": 966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 77.7268, "matched_fragments": 146, "total_fragments": 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