{
    "type": "genome",
    "identifier": "GCF_003813965.1",
    "organism": "Corynebacterium choanae",
    "title": "Corynebacterium choanae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bielefeld University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003813965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08448940",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1862358",
        "species_taxid": "1862358",
        "organism_name": "Corynebacterium choanae",
        "infraspecific_name": "strain=200CH",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/11/22",
        "asm_name": "ASM381396v1",
        "asm_submitter": "Bielefeld University",
        "gbrs_paired_asm": "GCA_003813965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/813/965/GCF_003813965.1_ASM381396v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2986773",
        "genome_size_ungapped": "2986773",
        "gc_percent": "57.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003813965.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2152",
        "protein_coding_gene_count": "2060",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-11-22",
    "dateModified": "2018-11-22",
    "datePublished": "2018-11-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium choanae"
        ],
        "sample_taxid": [
            "1862358"
        ],
        "sample_host_organism": [
            "Geronticus eremita"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.844 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2986773",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2986773",
        "N50 (bp)": "2986773",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.0",
        "Number of CDSs": "2190",
        "Average Protein Length": "343.1",
        "Coding Ratio (%)": "75.5",
        "Number of rRNAs": "12",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Corynebacterium choanae",
                "strain": "strain=200CH",
                "accession": "GCA_003813965.1",
                "taxid": 1862358,
                "species_taxid": 1862358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 995,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium diphtheriae",
                "strain": "",
                "accession": "GCA_902809765.1",
                "taxid": 1717,
                "species_taxid": 1717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6386,
                "matched_fragments": 52,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium efficiens",
                "strain": "strain=YS-314",
                "accession": "GCA_000011305.1",
                "taxid": 152794,
                "species_taxid": 152794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0733,
                "matched_fragments": 57,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium aquilae",
                "strain": "strain=S-613",
                "accession": "GCA_001941445.1",
                "taxid": 203263,
                "species_taxid": 203263,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8191,
                "matched_fragments": 96,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium pseudopelargi",
                "strain": "strain=812CH",
                "accession": "GCA_003814005.1",
                "taxid": 2080757,
                "species_taxid": 2080757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7502,
                "matched_fragments": 76,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium lujinxingii",
                "strain": "strain=zg-917",
                "accession": "GCA_014490555.1",
                "taxid": 2763010,
                "species_taxid": 2763010,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7021,
                "matched_fragments": 51,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium humireducens",
                "strain": "strain=DSM 45392",
                "accession": "GCA_000819445.1",
                "taxid": 1223514,
                "species_taxid": 1223514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5564,
                "matched_fragments": 62,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium pelargi",
                "strain": "strain=136/3",
                "accession": "GCA_004114895.1",
                "taxid": 1471400,
                "species_taxid": 1471400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2603,
                "matched_fragments": 80,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium efficiens",
                "strain": "strain=YS-314",
                "accession": "GCA_000160795.1",
                "taxid": 152794,
                "species_taxid": 152794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7526,
                "matched_fragments": 55,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium pelargi",
                "strain": "strain=CCM 8517",
                "accession": "GCA_014635485.1",
                "taxid": 1471400,
                "species_taxid": 1471400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2659,
                "matched_fragments": 74,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium ciconiae",
                "strain": "strain=DSM 44920",
                "accession": "GCA_000372385.1",
                "taxid": 227319,
                "species_taxid": 227319,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0776,
                "matched_fragments": 80,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium spheniscorum",
                "strain": "strain=CCUG 45512",
                "accession": "GCA_008693095.1",
                "taxid": 185761,
                "species_taxid": 185761,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0333,
                "matched_fragments": 64,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium humireducens",
                "strain": "strain=NBRC 106098",
                "accession": "GCA_001571025.1",
                "taxid": 1223514,
                "species_taxid": 1223514,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9593,
                "matched_fragments": 55,
                "total_fragments": 995,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003813965.1",
                "gtdb_species": "s__Corynebacterium choanae",
                "ani": 100.0,
                "matched_fragments": 995,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001457455.1",
                "gtdb_species": "s__Corynebacterium diphtheriae",
                "ani": 79.7578,
                "matched_fragments": 53,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "95.03",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 346,
                "status": "-"
            },
            {
                "accession": "GCF_000011305.1",
                "gtdb_species": "s__Corynebacterium efficiens",
                "ani": 79.0923,
                "matched_fragments": 58,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014490555.1",
                "gtdb_species": "s__Corynebacterium sp014490555",
                "ani": 78.8406,
                "matched_fragments": 52,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001941445.1",
                "gtdb_species": "s__Corynebacterium aquilae",
                "ani": 78.445,
                "matched_fragments": 93,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000819445.1",
                "gtdb_species": "s__Corynebacterium humireducens",
                "ani": 78.3745,
                "matched_fragments": 61,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "97.60",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001586215.1",
                "gtdb_species": "s__Corynebacterium simulans",
                "ani": 78.2786,
                "matched_fragments": 53,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "97.47",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000738175.1",
                "gtdb_species": "s__Corynebacterium jeikeium_C",
                "ani": 78.2214,
                "matched_fragments": 54,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004114895.1",
                "gtdb_species": "s__Corynebacterium pelargi",
                "ani": 78.0811,
                "matched_fragments": 79,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017307055.1",
                "gtdb_species": "s__Corynebacterium sp017307055",
                "ani": 77.7894,
                "matched_fragments": 144,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000988205.1",
                "gtdb_species": "s__Corynebacterium minutissimum_A",
                "ani": 77.6384,
                "matched_fragments": 50,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.53",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_002994655.1",
                "gtdb_species": "s__Corynebacterium sp002994655",
                "ani": 77.4092,
                "matched_fragments": 87,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016342265.1",
                "gtdb_species": "s__Corynebacterium sp016342265",
                "ani": 77.1463,
                "matched_fragments": 75,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000372385.1",
                "gtdb_species": "s__Corynebacterium ciconiae",
                "ani": 77.0776,
                "matched_fragments": 80,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900113445.1",
                "gtdb_species": "s__Corynebacterium spheniscorum",
                "ani": 76.9763,
                "matched_fragments": 64,
                "total_fragments": 995,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.275,
        "cell_length": 0.068,
        "doubling_h": -0.089,
        "growth_tmp": 35.111,
        "optimum_tmp": 35.173,
        "optimum_ph": 7.292,
        "genome_size": 2639223.511,
        "gc_content": 59.791,
        "coding_genes": 2390.094,
        "rRNA16S_genes": 4.282,
        "tRNA_genes": 52.979,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.75,
        "facultative_respiration": 0.231,
        "anaerobic_respiration": 0.063,
        "aerobic_respiration": 0.705,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.985,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.014,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Corynebacterium",
        "choanae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}