{ "type": "genome", "identifier": "GCF_003814005.1", "organism": "Corynebacterium pseudopelargi", "title": "Corynebacterium pseudopelargi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003814005.1", "bioproject": "PRJNA224116", "biosample": "SAMN08449372", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2080757", "species_taxid": "2080757", "organism_name": "Corynebacterium pseudopelargi", "infraspecific_name": "strain=812CH", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/22", "asm_name": "ASM381400v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_003814005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/814/005/GCF_003814005.1_ASM381400v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2348160", "genome_size_ungapped": "2348160", "gc_percent": "58.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003814005.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2226", "protein_coding_gene_count": "2152", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-22", "dateModified": "2018-11-22", "datePublished": "2018-11-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium pseudopelargi" ], "sample_taxid": [ "2080757" ], "sample_host_organism": [ "Geronticus eremita" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.662 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2348160", "Number of Sequences": "2", "Longest Sequences (bp)": "2345052", "N50 (bp)": "2345052", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.9", "Number of CDSs": "2212", "Average Protein Length": "316.4", "Coding Ratio (%)": "89.4", "Number of rRNAs": "12", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium pseudopelargi", "strain": "strain=812CH", "accession": "GCA_003814005.1", "taxid": 2080757, "species_taxid": 2080757, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 781, "total_fragments": 782, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium pelargi", "strain": "strain=136/3", "accession": "GCA_004114895.1", "taxid": 1471400, "species_taxid": 1471400, "relation_to_type": "type", "validated": true, "ani": 89.7539, "matched_fragments": 705, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pelargi", "strain": "strain=CCM 8517", "accession": "GCA_014635485.1", "taxid": 1471400, "species_taxid": 1471400, "relation_to_type": "type", "validated": true, "ani": 89.5625, "matched_fragments": 708, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium gerontici", "strain": "strain=W8", "accession": "GCA_003813985.1", "taxid": 2079234, "species_taxid": 2079234, "relation_to_type": "type", "validated": true, "ani": 82.2533, "matched_fragments": 436, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ulcerans", "strain": "strain=NCTC7910", "accession": "GCA_900187135.1", "taxid": 65058, "species_taxid": 65058, "relation_to_type": "type", "validated": true, "ani": 79.1386, "matched_fragments": 112, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 78.7189, "matched_fragments": 199, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium aquilae", "strain": "strain=S-613", "accession": "GCA_001941445.1", "taxid": 203263, "species_taxid": 203263, "relation_to_type": "type", "validated": true, "ani": 78.5021, "matched_fragments": 155, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.247, "matched_fragments": 147, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae", "strain": "strain=DSM 44123", "accession": "GCA_001913265.1", "taxid": 1717, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 78.1577, "matched_fragments": 121, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium silvaticum", "strain": "strain=KL0182", "accession": "GCA_004382825.2", "taxid": 2320431, "species_taxid": 2320431, "relation_to_type": "type", "validated": true, "ani": 78.1238, "matched_fragments": 112, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bouchesdurhonense", "strain": "strain=SN14", "accession": "GCA_900078305.2", "taxid": 1720192, "species_taxid": 1720192, "relation_to_type": "type", "validated": true, "ani": 77.957, "matched_fragments": 129, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=PRD07", "accession": "GCA_016785885.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 77.8236, "matched_fragments": 109, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium godavarianum", "strain": "strain=LMG 29598", "accession": "GCA_007559235.1", "taxid": 2054421, "species_taxid": 2054421, "relation_to_type": "type", "validated": true, "ani": 77.476, "matched_fragments": 108, "total_fragments": 782, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium lowii", "strain": "strain=NML 130206", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004114895.1", "gtdb_species": "s__Corynebacterium pelargi", "ani": 89.7539, "matched_fragments": 705, "total_fragments": 782, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003813985.1", "gtdb_species": "s__Corynebacterium geronticis", "ani": 82.2533, "matched_fragments": 436, "total_fragments": 782, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, 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