{ "type": "genome", "identifier": "GCF_003815535.1", "organism": "Aurantiacibacter spongiae", "title": "Aurantiacibacter spongiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Xiamen Medical College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003815535.1", "bioproject": "PRJNA224116", "biosample": "SAMN10434210", "wgs_master": "RPFZ00000000.1", "refseq_category": "reference genome", "taxid": "2488860", "species_taxid": "2488860", "organism_name": "Aurantiacibacter spongiae", "infraspecific_name": "strain=HN-E23", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/24", "asm_name": "ASM381553v1", "asm_submitter": "Xiamen Medical College", "gbrs_paired_asm": "GCA_003815535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/815/535/GCF_003815535.1_ASM381553v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2855855", "genome_size_ungapped": "2855855", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003815535.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2827", "protein_coding_gene_count": "2762", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-24", "dateModified": "2018-11-24", "datePublished": "2018-11-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Aurantiacibacter spongiae" ], "sample_taxid": [ "2488860" ], "sample_host_organism": [ "sponge" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yangpu Bay, Hainan" ], "sample_host_location_id": [], "data_size": "0.786 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2855855", "Number of Sequences": "2", "Longest Sequences (bp)": "2847857", "N50 (bp)": "2847857", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.5", "Number of CDSs": "2786", "Average Protein Length": "317.1", "Coding Ratio (%)": "92.8", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aurantiacibacter luteus", "strain": "strain=KA37", "accession": "GCA_001010945.1", "taxid": 1581420, "species_taxid": 1581420, "relation_to_type": "type", "validated": true, "ani": 80.0723, "matched_fragments": 533, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter xanthus", "strain": "strain=CCTCC AB 2015396", "accession": "GCA_003584015.1", "taxid": 1784712, "species_taxid": 1784712, "relation_to_type": "type", "validated": true, "ani": 79.8734, "matched_fragments": 415, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter aerophilus", "strain": "strain=Ery1", "accession": "GCA_003581645.1", "taxid": 2306995, "species_taxid": 2306995, "relation_to_type": "type", "validated": true, "ani": 79.7799, "matched_fragments": 381, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 79.7709, "matched_fragments": 407, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter zhengii", "strain": "strain=V18", "accession": "GCA_003584125.1", "taxid": 2307003, "species_taxid": 2307003, "relation_to_type": "type", "validated": true, "ani": 79.6693, "matched_fragments": 491, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 79.5232, "matched_fragments": 387, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter odishensis", "strain": "strain=KCTC 23981", "accession": "GCA_003605195.1", "taxid": 1155476, "species_taxid": 1155476, "relation_to_type": "type", "validated": true, "ani": 79.3998, "matched_fragments": 490, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pelagi", "strain": "strain=JCM 17468", "accession": "GCA_009827295.1", "taxid": 994320, "species_taxid": 994320, "relation_to_type": "type", "validated": true, "ani": 79.351, "matched_fragments": 381, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter rhizosphaerae", "strain": "strain=GH3-10", "accession": "GCA_009807005.1", "taxid": 2691582, "species_taxid": 2691582, "relation_to_type": "type", "validated": true, "ani": 79.2715, "matched_fragments": 409, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aurantiaca", "strain": "strain=1NDH13", "accession": "GCA_019711375.1", "taxid": 2867233, "species_taxid": 2867233, "relation_to_type": "type", "validated": true, "ani": 79.1554, "matched_fragments": 369, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter gangjinensis", "strain": "strain=K7-2", "accession": "GCA_001010925.1", "taxid": 502682, "species_taxid": 502682, "relation_to_type": "type", "validated": true, "ani": 79.1407, "matched_fragments": 426, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter gangjinensis", "strain": "strain=CGMCC 1.15024", "accession": "GCA_001886695.1", "taxid": 502682, "species_taxid": 502682, "relation_to_type": "type", "validated": true, "ani": 79.1373, "matched_fragments": 419, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania qiaonensis", "strain": "strain=6D47A", "accession": "GCA_019711515.1", "taxid": 2867240, "species_taxid": 2867240, "relation_to_type": "type", "validated": true, "ani": 78.9405, "matched_fragments": 321, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.8118, "matched_fragments": 355, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter suaedae", "strain": "strain=GH3-15", "accession": "GCA_005434915.1", "taxid": 2545755, "species_taxid": 2545755, "relation_to_type": "type", "validated": true, "ani": 78.7847, "matched_fragments": 356, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=DSM 100738", "accession": "GCA_014199315.1", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 78.7754, "matched_fragments": 314, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella amylolytica", "strain": "strain=NS1", "accession": "GCA_003626915.1", "taxid": 2338327, "species_taxid": 2338327, "relation_to_type": "type", "validated": true, "ani": 78.7468, "matched_fragments": 377, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium atlanticum", "strain": "strain=26DY36", "accession": "GCA_001008165.2", "taxid": 1267766, "species_taxid": 1267766, "relation_to_type": "type", "validated": true, "ani": 78.7337, "matched_fragments": 315, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium mercuriale", "strain": "strain=Coronado", "accession": "GCA_000802385.1", "taxid": 1572751, "species_taxid": 1572751, "relation_to_type": "type", "validated": true, "ani": 78.6446, "matched_fragments": 321, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 78.5225, "matched_fragments": 354, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 78.4507, "matched_fragments": 316, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 78.2062, "matched_fragments": 279, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium piscinae", "strain": "strain=KCTC 42194", "accession": "GCA_014230355.1", "taxid": 1507448, "species_taxid": 1507448, "relation_to_type": "type", "validated": true, "ani": 78.1794, "matched_fragments": 286, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania thermophila", "strain": "strain=CFH 74456", "accession": "GCA_004153605.1", "taxid": 2509361, "species_taxid": 2509361, "relation_to_type": "type", "validated": true, "ani": 78.178, "matched_fragments": 246, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003815535.1", "gtdb_species": "s__Alteraurantiacibacter spongiae", "ani": 100.0, "matched_fragments": 951, "total_fragments": 951, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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{ "accession": "GCA_002337385.1", "gtdb_species": "s__Alteraurantiacibacter sp002337385", "ani": 79.2769, "matched_fragments": 343, "total_fragments": 951, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009807005.1", "gtdb_species": "s__Alteraurantiacibacter rhizosphaerae", "ani": 79.2715, "matched_fragments": 409, "total_fragments": 951, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alteraurantiacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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