{ "type": "genome", "identifier": "GCF_003815775.1", "organism": "Chryseobacterium joostei", "title": "Chryseobacterium joostei", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial Special Pathogens Branch (CDC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003815775.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421768", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "112234", "species_taxid": "112234", "organism_name": "Chryseobacterium joostei", "infraspecific_name": "strain=DSM 16927", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/25", "asm_name": "ASM381577v1", "asm_submitter": "Bacterial Special Pathogens Branch (CDC)", "gbrs_paired_asm": "GCA_003815775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/815/775/GCF_003815775.1_ASM381577v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4890621", "genome_size_ungapped": "4890621", "gc_percent": "35.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003815775.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4518", "protein_coding_gene_count": "4389", "non_coding_gene_count": "111", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-25", "dateModified": "2018-11-25", "datePublished": "2018-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium joostei" ], "sample_taxid": [ "112234" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.363 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4890621", "Number of Sequences": "2", "Longest Sequences (bp)": "4860412", "N50 (bp)": "4860412", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.4", "Number of CDSs": "4363", "Average Protein Length": "323.6", "Coding Ratio (%)": "86.6", "Number of rRNAs": "21", "Number of tRNAs": "85", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium joostei", "strain": "strain=DSM 16927", "accession": "GCA_003815775.1", "taxid": 112234, "species_taxid": 112234, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1627, "total_fragments": 1630, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium joostei", "strain": "strain=DSM 16927", "accession": "GCA_900156585.1", "taxid": 112234, "species_taxid": 112234, "relation_to_type": "type", "validated": true, "ani": 99.9897, "matched_fragments": 1603, "total_fragments": 1630, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium oncorhynchi", "strain": "strain=701B-08", "accession": "GCA_002899895.2", "taxid": 741074, "species_taxid": 741074, "relation_to_type": "type", "validated": true, "ani": 93.9746, "matched_fragments": 1339, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aurantiacum", "strain": "strain=F30", "accession": "GCA_003020585.1", "taxid": 2116499, "species_taxid": 2116499, "relation_to_type": "type", "validated": true, "ani": 91.22, "matched_fragments": 1318, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": "GCA_900100075.1", "taxid": 445960, "species_taxid": 445960, "relation_to_type": "type", "validated": true, "ani": 84.3431, "matched_fragments": 1142, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 84.1279, "matched_fragments": 1103, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium nakagawai", "strain": "strain=NCTC13529", "accession": "GCA_900637665.1", "taxid": 1241982, "species_taxid": 1241982, "relation_to_type": "type", "validated": true, "ani": 84.0146, "matched_fragments": 1156, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 83.9009, "matched_fragments": 1058, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium panacisoli", "strain": "strain=Gsoil 183", "accession": "GCA_008274625.1", "taxid": 1807141, "species_taxid": 1807141, "relation_to_type": "type", "validated": true, "ani": 83.5197, "matched_fragments": 1077, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.4593, "matched_fragments": 681, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 80.3548, "matched_fragments": 750, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.3544, "matched_fragments": 696, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.2763, "matched_fragments": 513, "total_fragments": 1630, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003815775.1", "gtdb_species": "s__Chryseobacterium joostei", "ani": 100.0, "matched_fragments": 1626, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "98.66", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_002899895.1", "gtdb_species": "s__Chryseobacterium oncorhynchi", "ani": 93.9761, "matched_fragments": 1339, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003020585.1", "gtdb_species": "s__Chryseobacterium aurantiacum", "ani": 91.2328, "matched_fragments": 1317, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003815675.1", "gtdb_species": "s__Chryseobacterium sp003815675", "ani": 87.2194, "matched_fragments": 1306, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001684975.1", "gtdb_species": "s__Chryseobacterium artocarpi", "ani": 84.1414, "matched_fragments": 1101, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900637665.1", "gtdb_species": "s__Chryseobacterium nakagawai", "ani": 83.9938, "matched_fragments": 1151, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900078205.2", "gtdb_species": "s__Chryseobacterium timonianum", "ani": 83.9119, "matched_fragments": 1131, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008274625.1", "gtdb_species": "s__Chryseobacterium sp008274625", "ani": 83.5168, "matched_fragments": 1077, "total_fragments": 1630, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": 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