{ "type": "genome", "identifier": "GCF_003818135.1", "organism": "Buttiauxella warmboldiae", "title": "Buttiauxella warmboldiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003818135.1", "bioproject": "PRJNA224116", "biosample": "SAMN10440164", "wgs_master": "RPOH00000000.1", "refseq_category": "reference genome", "taxid": "82993", "species_taxid": "82993", "organism_name": "Buttiauxella warmboldiae", "infraspecific_name": "strain=CCUG 35512", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/25", "asm_name": "ASM381813v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_003818135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/818/135/GCF_003818135.1_ASM381813v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4301460", "genome_size_ungapped": "4301460", "gc_percent": "52.500000", "replicon_count": "0", "scaffold_count": "135", "contig_count": "135", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003818135.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4057", "protein_coding_gene_count": "3856", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-25", "dateModified": "2018-11-25", "datePublished": "2018-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Buttiauxella warmboldiae" ], "sample_taxid": [ "82993" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Sydney" ], "sample_host_location_id": [], "data_size": "1.230 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4301460", "Number of Sequences": "135", "Longest Sequences (bp)": "204542", "N50 (bp)": "55663", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.4", "Number of CDSs": "3891", "Average Protein Length": "322.6", "Coding Ratio (%)": "87.5", "Number of rRNAs": "8", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Buttiauxella warmboldiae", "strain": "strain=CCUG 35512", "accession": "GCA_003818135.1", "taxid": 82993, "species_taxid": 82993, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1368, 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"below_threshold" }, { "organism_name": "Buttiauxella gaviniae", "strain": "strain=ATCC 51604", "accession": "GCA_001654835.1", "taxid": 82990, "species_taxid": 82990, "relation_to_type": "type", "validated": true, "ani": 85.9402, "matched_fragments": 992, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella massiliensis", "strain": "strain=Marseille-P9829", "accession": "GCA_902500225.1", "taxid": 2831590, "species_taxid": 2831590, "relation_to_type": "type", "validated": true, "ani": 85.8801, "matched_fragments": 1022, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Buttiauxella brennerae", "strain": "strain=ATCC 51605", "accession": "GCA_001654925.1", "taxid": 82988, "species_taxid": 82988, "relation_to_type": "type", "validated": true, "ani": 85.6343, "matched_fragments": 995, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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