{ "type": "genome", "identifier": "GCF_003820355.1", "organism": "Alteromonas sediminis", "title": "Alteromonas sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003820355.1", "bioproject": "PRJNA224116", "biosample": "SAMN09530252", "wgs_master": "RPOK00000000.1", "refseq_category": "reference genome", "taxid": "2259342", "species_taxid": "2259342", "organism_name": "Alteromonas sediminis", "infraspecific_name": "strain=U0105", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/25", "asm_name": "ASM382035v1", "asm_submitter": "Shandong University", "gbrs_paired_asm": "GCA_003820355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/820/355/GCF_003820355.1_ASM382035v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3963939", "genome_size_ungapped": "3963939", "gc_percent": "45.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003820355.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3665", "protein_coding_gene_count": "3588", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-25", "dateModified": "2018-11-25", "datePublished": "2018-11-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas sediminis" ], "sample_taxid": [ "2259342" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Weihai" ], "sample_host_location_id": [], "data_size": "1.135 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3963939", "Number of Sequences": "14", "Longest Sequences (bp)": "1158927", "N50 (bp)": "853149", "Gap Ratio (%)": "0.000050", "GCcontent (%)": "45.3", "Number of CDSs": "3591", "Average Protein Length": "337.2", "Coding Ratio (%)": "91.6", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas sediminis", "strain": "strain=U0105", "accession": "GCA_003820355.1", "taxid": 2259342, "species_taxid": 2259342, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1316, "total_fragments": 1316, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alteromonas ponticola", "strain": "strain=MYP5", "accession": "GCA_012911815.1", "taxid": 2720613, "species_taxid": 2720613, "relation_to_type": "type", "validated": true, "ani": 78.8578, "matched_fragments": 68, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimonas iocasae", "strain": "strain=KX18D6", "accession": "GCA_006228385.1", "taxid": 2572577, "species_taxid": 2572577, "relation_to_type": "type", "validated": true, "ani": 78.5939, "matched_fragments": 82, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas genovensis", "strain": "strain=LMG 24078", "accession": "GCA_010500895.1", "taxid": 471225, "species_taxid": 471225, "relation_to_type": "type", "validated": true, "ani": 78.282, "matched_fragments": 82, "total_fragments": 1316, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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