{
    "type": "genome",
    "identifier": "GCF_003841405.1",
    "organism": "Tetragenococcus halophilus subsp. halophilus DSM 20339",
    "title": "Tetragenococcus halophilus subsp. halophilus DSM 20339",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chung-Ang University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003841405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN08714534",
        "wgs_master": "PXYA00000000.1",
        "refseq_category": "na",
        "taxid": "1123358",
        "species_taxid": "51669",
        "organism_name": "Tetragenococcus halophilus subsp. halophilus DSM 20339",
        "infraspecific_name": "strain=DSM 20339",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/11/26",
        "asm_name": "ASM384140v1",
        "asm_submitter": "Chung-Ang University",
        "gbrs_paired_asm": "GCA_003841405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/841/405/GCF_003841405.1_ASM384140v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2595756",
        "genome_size_ungapped": "2595756",
        "gc_percent": "36.000000",
        "replicon_count": "0",
        "scaffold_count": "5",
        "contig_count": "5",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003841405.1-RS_2024_05_17",
        "annotation_date": "2024-05-17",
        "total_gene_count": "2565",
        "protein_coding_gene_count": "2357",
        "non_coding_gene_count": "84",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-11-26",
    "dateModified": "2018-11-26",
    "datePublished": "2018-11-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tetragenococcus halophilus subsp. halophilus DSM 20339"
        ],
        "sample_taxid": [
            "1123358"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "0.724 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2595756",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "1167867",
        "N50 (bp)": "804210",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.0",
        "Number of CDSs": "2553",
        "Average Protein Length": "288.7",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "15",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Tetragenococcus halophilus subsp. halophilus",
                "strain": "strain=DSM 20339",
                "accession": "GCA_003841405.1",
                "taxid": 1513897,
                "species_taxid": 51669,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 860,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tetragenococcus halophilus subsp. flandriensis",
                "strain": "strain=DSM 23766",
                "accession": "GCA_002922845.1",
                "taxid": 1513898,
                "species_taxid": 51669,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.0817,
                "matched_fragments": 625,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tetragenococcus solitarius",
                "strain": "strain=NBRC 100494",
                "accession": "GCA_001544195.1",
                "taxid": 71453,
                "species_taxid": 71453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5214,
                "matched_fragments": 471,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tetragenococcus muriaticus",
                "strain": "strain=DSM 15685",
                "accession": "GCA_000423785.1",
                "taxid": 64642,
                "species_taxid": 64642,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2531,
                "matched_fragments": 410,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tetragenococcus koreensis",
                "strain": "strain=KCTC 3924",
                "accession": "GCA_003795145.1",
                "taxid": 290335,
                "species_taxid": 290335,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8931,
                "matched_fragments": 514,
                "total_fragments": 863,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003841405.1",
                "gtdb_species": "s__Tetragenococcus halophilus",
                "ani": 100.0,
                "matched_fragments": 861,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Tetragenococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.86",
                "min_intra_species_ani": "96.17",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 30,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003795125.1",
                "gtdb_species": "s__Tetragenococcus osmophilus",
                "ani": 82.179,
                "matched_fragments": 456,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Tetragenococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001544195.1",
                "gtdb_species": "s__Tetragenococcus solitarius",
                "ani": 81.5025,
                "matched_fragments": 473,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Tetragenococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000423785.1",
                "gtdb_species": "s__Tetragenococcus muriaticus",
                "ani": 81.2978,
                "matched_fragments": 411,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Tetragenococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.93",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003795145.1",
                "gtdb_species": "s__Tetragenococcus koreensis",
                "ani": 80.9039,
                "matched_fragments": 517,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Tetragenococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_011397115.1",
                "gtdb_species": "s__Enterococcus_C saigonensis",
                "ani": 78.8687,
                "matched_fragments": 95,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017377505.1",
                "gtdb_species": "s__Enterococcus sp017377505",
                "ani": 77.238,
                "matched_fragments": 51,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.67",
                "min_intra_species_ani": "95.67",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017426705.1",
                "gtdb_species": "s__Enterococcus_F sp017426705",
                "ani": 77.0733,
                "matched_fragments": 120,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002148425.1",
                "gtdb_species": "s__Enterococcus sp002148425",
                "ani": 76.9661,
                "matched_fragments": 60,
                "total_fragments": 863,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.88",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": -0.151,
        "doubling_h": null,
        "growth_tmp": 28.333,
        "optimum_tmp": 29.666,
        "optimum_ph": 8.5,
        "genome_size": 2522175.2,
        "gc_content": 36.035,
        "coding_genes": 2364.2,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 62.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Tetragenococcus",
        "halophilus",
        "subsp.",
        "halophilus",
        "DSM",
        "20339"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}