{ "type": "genome", "identifier": "GCF_003846135.1", "organism": "Erwinia psidii", "title": "Erwinia psidii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidade de Brasilia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003846135.1", "bioproject": "PRJNA224116", "biosample": "SAMN10305463", "wgs_master": "RHHM00000000.1", "refseq_category": "reference genome", "taxid": "69224", "species_taxid": "69224", "organism_name": "Erwinia psidii", "infraspecific_name": "strain=IBSBF 435", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/27", "asm_name": "ASM384613v1", "asm_submitter": "Universidade de Brasilia", "gbrs_paired_asm": "GCA_003846135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/846/135/GCF_003846135.1_ASM384613v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4503018", "genome_size_ungapped": "4502534", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003846135.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4190", "protein_coding_gene_count": "3918", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-27", "dateModified": "2018-11-27", "datePublished": "2018-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Erwinia psidii" ], "sample_taxid": [ "69224" ], "sample_host_organism": [ "Psidium guajava" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Sao Paulo, Valinhos" ], "sample_host_location_id": [], "data_size": "1.280 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4503018", "Number of Sequences": "42", "Longest Sequences (bp)": "627986", "N50 (bp)": "268284", "Gap Ratio (%)": "0.010748", "GCcontent (%)": "51.5", "Number of CDSs": "4067", "Average Protein Length": "305.0", "Coding Ratio (%)": "82.6", "Number of rRNAs": "1", "Number of tRNAs": "63", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erwinia psidii", "strain": "strain=IBSBF 435", "accession": "GCA_003846135.1", "taxid": 69224, "species_taxid": 69224, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1478, "total_fragments": 1479, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Erwinia phyllosphaerae", "strain": "strain=CMYE1", "accession": "GCA_019132875.1", "taxid": 2853256, "species_taxid": 2853256, "relation_to_type": "type", "validated": true, "ani": 79.8089, "matched_fragments": 608, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia aphidicola", "strain": "strain=X001", "accession": "GCA_024169515.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 79.4984, "matched_fragments": 557, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia aphidicola", "strain": "strain=JCM 21238", "accession": "GCA_014773485.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 79.4594, "matched_fragments": 540, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia iniecta", 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