{ "type": "genome", "identifier": "GCF_003850565.1", "organism": "Pseudomonas sessilinigenes", "title": "Pseudomonas sessilinigenes", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universite de Moncton", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003850565.1", "bioproject": "PRJNA224116", "biosample": "SAMN08359212", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "658629", "species_taxid": "658629", "organism_name": "Pseudomonas sessilinigenes", "infraspecific_name": "strain=CMR12a", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/29", "asm_name": "ASM385056v1", "asm_submitter": "Universite de Moncton", "gbrs_paired_asm": "GCA_003850565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/850/565/GCF_003850565.1_ASM385056v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6896611", "genome_size_ungapped": "6896611", "gc_percent": "63.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003850565.1-RS_2024_07_22", "annotation_date": "2024-07-22", "total_gene_count": "6286", "protein_coding_gene_count": "6151", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-29", "dateModified": "2018-11-29", "datePublished": "2018-11-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas sessilinigenes" ], "sample_taxid": [ "658629" ], "sample_host_organism": [ "Xanthosoma sagittifolium" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Cameroon: South West province, Bokwai" ], "sample_host_location_id": [], "data_size": "1.909 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6896611", "Number of Sequences": "1", "Longest Sequences (bp)": "6896611", "N50 (bp)": "6896611", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.8", "Number of CDSs": "6200", "Average Protein Length": "330.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "16", "Number of tRNAs": "77", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas sessilinigenes", "strain": "strain=CMR12a", "accession": "GCA_003850565.1", "taxid": 658629, "species_taxid": 658629, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. piscium", "strain": "strain=DSM 21509", "accession": "GCA_001269555.1", "taxid": 1513890, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 85.4512, "matched_fragments": 1551, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aureofaciens", "strain": "strain=DSM 6698", "accession": "GCA_003851905.1", "taxid": 587851, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 85.3998, "matched_fragments": 1582, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chlororaphis subsp. aurantiaca", "strain": "strain=DSM 19603", "accession": "GCA_003851835.1", "taxid": 86192, "species_taxid": 587753, "relation_to_type": "type", "validated": true, "ani": 85.2957, "matched_fragments": 1568, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas viciae", "strain": "strain=11K1", "accession": "GCA_004786035.1", "taxid": 2505979, "species_taxid": 2505979, "relation_to_type": "type", "validated": true, "ani": 83.0515, "matched_fragments": 1211, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas triticicola", "strain": "strain=SWRI88", "accession": "GCA_019145375.1", "taxid": 2842345, "species_taxid": 2842345, "relation_to_type": "type", "validated": true, "ani": 82.5999, "matched_fragments": 1132, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hamedanensis", "strain": "strain=SWRI65", "accession": "GCA_014268595.2", "taxid": 2745504, "species_taxid": 2745504, "relation_to_type": "type", "validated": true, "ani": 82.3231, "matched_fragments": 1156, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas baetica", "strain": "strain=LMG 25716", "accession": "GCA_002813455.1", "taxid": 674054, "species_taxid": 674054, "relation_to_type": "type", "validated": true, "ani": 82.2933, "matched_fragments": 1231, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 82.2563, "matched_fragments": 1198, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas baetica", "strain": "strain=a390", "accession": "GCA_003031005.1", "taxid": 674054, "species_taxid": 674054, "relation_to_type": "type", "validated": true, "ani": 82.2394, "matched_fragments": 1207, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas bharatica", "strain": "strain=CSV86", "accession": "GCA_000319305.2", "taxid": 2692112, "species_taxid": 2692112, "relation_to_type": "type", "validated": true, "ani": 82.178, "matched_fragments": 1109, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas urethralis", "strain": "strain=BML-PP042", "accession": "GCA_021602465.1", "taxid": 2740517, "species_taxid": 2740517, "relation_to_type": "suspected-type", "validated": true, "ani": 81.595, "matched_fragments": 1022, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 81.1473, "matched_fragments": 804, "total_fragments": 2298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", 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