{ "type": "genome", "identifier": "GCF_003851725.1", "organism": "Cellulomonas algicola", "title": "Cellulomonas algicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Univercity of Yamanashi", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003851725.1", "bioproject": "PRJNA224116", "biosample": "SAMD00137418", "wgs_master": "BHYL00000000.1", "refseq_category": "na", "taxid": "2071633", "species_taxid": "2071633", "organism_name": "Cellulomonas algicola", "infraspecific_name": "strain=TKZ-21", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/12", "asm_name": "ASM385172v1", "asm_submitter": "Univercity of Yamanashi", "gbrs_paired_asm": "GCA_003851725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/851/725/GCF_003851725.1_ASM385172v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4499308", "genome_size_ungapped": "4499208", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "535", "contig_count": "535", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003851725.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "4327", "protein_coding_gene_count": "4106", "non_coding_gene_count": "53", "pubmed_id": "31232683" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-12", "dateModified": "2018-11-12", "datePublished": "2018-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Cellulomonas algicola" ], "sample_taxid": [ "2071633" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Yamanashi, Takizawa river" ], "sample_host_location_id": [], "data_size": "1.168 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4499308", "Number of Sequences": "535", "Longest Sequences (bp)": "85012", "N50 (bp)": "14408", "Gap Ratio (%)": "0.002223", "GCcontent (%)": "74.3", "Number of CDSs": "3693", "Average Protein Length": "319.1", "Coding Ratio (%)": "78.6", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 86.8464, "matched_fragments": 878, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=ATCC 484", "accession": "GCA_000212695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 86.6691, "matched_fragments": 1003, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 86.6129, "matched_fragments": 991, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 82.3505, "matched_fragments": 774, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gelida", "strain": "strain=JCM 1490", "accession": "GCA_014647015.1", "taxid": 1712, "species_taxid": 1712, "relation_to_type": "type", "validated": true, "ani": 82.0839, "matched_fragments": 725, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas massiliensis", "strain": "strain=JC225", "accession": "GCA_000312005.1", "taxid": 1465811, "species_taxid": 1465811, "relation_to_type": "type", "validated": true, "ani": 82.0341, "matched_fragments": 712, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas iranensis", "strain": "strain=NBRC 101100", "accession": "GCA_001552375.1", "taxid": 76862, "species_taxid": 76862, "relation_to_type": "type", "validated": true, "ani": 82.0301, "matched_fragments": 712, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gelida", "strain": "strain=NBRC 3748", "accession": "GCA_006538725.1", "taxid": 1712, "species_taxid": 1712, "relation_to_type": "type", "validated": true, "ani": 81.9493, "matched_fragments": 736, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gilvus", "strain": "strain=ATCC 13127", "accession": "GCA_000218545.1", "taxid": 11, "species_taxid": 11, "relation_to_type": "type", "validated": true, "ani": 81.8297, "matched_fragments": 675, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fulva", "strain": "strain=DKR-3", "accession": "GCA_018531375.1", "taxid": 2835530, "species_taxid": 2835530, "relation_to_type": "type", "validated": true, "ani": 81.6884, "matched_fragments": 739, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas shaoxiangyii", "strain": "strain=Z28", "accession": "GCA_004798685.1", "taxid": 2566013, "species_taxid": 2566013, "relation_to_type": "type", "validated": true, "ani": 81.4053, "matched_fragments": 741, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas soli", "strain": "strain=DSM 24484", "accession": "GCA_013409305.1", "taxid": 931535, "species_taxid": 931535, "relation_to_type": "type", "validated": true, "ani": 81.3651, "matched_fragments": 696, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 81.0348, "matched_fragments": 731, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 79.7599, "matched_fragments": 686, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 79.5022, "matched_fragments": 558, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 79.3362, "matched_fragments": 580, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavimobilis marinus", "strain": "strain=DSM 19083", "accession": "GCA_900113055.1", "taxid": 285351, "species_taxid": 285351, "relation_to_type": "type", "validated": true, "ani": 79.2549, "matched_fragments": 478, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavimobilis marinus", "strain": "strain=CGMCC 1.3457", "accession": "GCA_014653315.1", "taxid": 285351, "species_taxid": 285351, "relation_to_type": "type", "validated": true, "ani": 79.2002, "matched_fragments": 485, "total_fragments": 1246, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003851725.1", "gtdb_species": "s__Cellulomonas algicola", "ani": 100.0, "matched_fragments": 1235, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.47", "min_intra_species_ani": "95.68", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_012396155.1", "gtdb_species": "s__Cellulomonas septica", "ani": 94.6351, "matched_fragments": 677, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004306155.1", "gtdb_species": "s__Cellulomonas biazotea", "ani": 86.894, "matched_fragments": 874, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000212695.1", "gtdb_species": "s__Cellulomonas fimi", "ani": 86.6895, "matched_fragments": 1001, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017744555.1", "gtdb_species": "s__Cellulomonas sp017744555", "ani": 83.5155, "matched_fragments": 820, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016862675.1", "gtdb_species": "s__Cellulomonas chitinilytica", "ani": 83.2094, "matched_fragments": 890, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001552375.1", "gtdb_species": "s__Cellulomonas iranensis", "ani": 82.0515, "matched_fragments": 710, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_006538725.1", "gtdb_species": "s__Cellulomonas gelida", "ani": 81.9765, "matched_fragments": 734, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.61", "min_intra_species_ani": "99.23", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000312005.1", "gtdb_species": "s__Cellulomonas massiliensis", "ani": 81.9303, "matched_fragments": 722, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001429255.1", "gtdb_species": "s__Cellulomonas sp001429255", "ani": 81.8544, "matched_fragments": 792, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900114185.1", "gtdb_species": "s__Cellulomonas sp900114185", "ani": 80.993, "matched_fragments": 727, "total_fragments": 1246, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.019, "cell_length": 0.334, "doubling_h": null, "growth_tmp": 29.739, "optimum_tmp": 28.666, "optimum_ph": 7.856, "genome_size": 2808659.677, "gc_content": 73.924, "coding_genes": 3692.833, "rRNA16S_genes": 2.0, "tRNA_genes": 45.0, "gram_stain": 0.944, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.25, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.75, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.846, "coccus_cell_shape": 0.076, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.076, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cellulomonas", "algicola" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }