{ "type": "genome", "identifier": "GCF_003852705.1", "organism": "Amniculibacterium aquaticum", "title": "Amniculibacterium aquaticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Kaohsiung University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003852705.1", "bioproject": "PRJNA224116", "biosample": "SAMN10250235", "wgs_master": "REFA00000000.1", "refseq_category": "reference genome", "taxid": "2479858", "species_taxid": "2479858", "organism_name": "Amniculibacterium aquaticum", "infraspecific_name": "strain=KYPW7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/11/30", "asm_name": "ASM385270v1", "asm_submitter": "National Kaohsiung University of Science and Technology", "gbrs_paired_asm": "GCA_003852705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/852/705/GCF_003852705.1_ASM385270v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2549257", "genome_size_ungapped": "2549257", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003852705.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2351", "protein_coding_gene_count": "2286", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-11-30", "dateModified": "2018-11-30", "datePublished": "2018-11-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Amniculibacterium aquaticum" ], "sample_taxid": [ "2479858" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "0.714 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2549257", "Number of Sequences": "74", "Longest Sequences (bp)": "303951", "N50 (bp)": "87959", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.8", "Number of CDSs": "2272", "Average Protein Length": "328.4", "Coding Ratio (%)": "87.8", "Number of rRNAs": "2", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amniculibacterium aquaticum", "strain": "strain=KYPW7", "accession": "GCA_003852705.1", "taxid": 2479858, "species_taxid": 2479858, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 814, "total_fragments": 815, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium taklimakanense", "strain": "strain=NCTC13490", "accession": "GCA_900187185.1", "taxid": 536441, "species_taxid": 536441, "relation_to_type": "type", "validated": true, "ani": 78.1544, "matched_fragments": 103, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cheonjiense", "strain": "strain=RJ-7-14", "accession": "GCA_012927265.1", "taxid": 2728845, "species_taxid": 2728845, "relation_to_type": "type", "validated": true, "ani": 78.0297, "matched_fragments": 105, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 77.9493, "matched_fragments": 117, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=FDAARGOS_1103", "accession": "GCA_016766875.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 77.8531, "matched_fragments": 124, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=ATCC 35910", "accession": "GCA_000143785.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 77.8051, "matched_fragments": 124, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 77.6428, "matched_fragments": 113, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 77.6035, "matched_fragments": 135, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cucumeris", "strain": "strain=GSE06", "accession": "GCA_001593385.1", "taxid": 1813611, "species_taxid": 1813611, "relation_to_type": "type", "validated": true, "ani": 77.5911, "matched_fragments": 119, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 77.5783, "matched_fragments": 119, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", "taxid": 236814, "species_taxid": 236814, "relation_to_type": "type", "validated": true, "ani": 77.5304, "matched_fragments": 133, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oncorhynchi", "strain": "strain=701B-08", "accession": "GCA_002899895.2", "taxid": 741074, "species_taxid": 741074, "relation_to_type": "type", "validated": true, "ani": 77.521, "matched_fragments": 117, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cloacibacterium normanense", "strain": "strain=NRS-1", "accession": "GCA_003860565.1", "taxid": 237258, "species_taxid": 237258, "relation_to_type": "type", "validated": true, "ani": 77.4915, "matched_fragments": 160, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cloacibacterium normanense", "strain": "strain=DSM 15886", "accession": "GCA_900104195.1", "taxid": 237258, "species_taxid": 237258, "relation_to_type": "type", "validated": true, "ani": 77.4736, "matched_fragments": 157, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium joostei", "strain": "strain=DSM 16927", "accession": "GCA_003815775.1", "taxid": 112234, "species_taxid": 112234, "relation_to_type": "type", "validated": true, "ani": 77.4591, "matched_fragments": 109, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cloacibacterium normanense", "strain": "strain=NRS-1", "accession": "GCA_001747495.1", "taxid": 237258, "species_taxid": 237258, "relation_to_type": "type", "validated": true, "ani": 77.4208, "matched_fragments": 154, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella gelatinilytica", "strain": "strain=G5-32", "accession": "GCA_015679325.1", "taxid": 2787636, "species_taxid": 2787636, "relation_to_type": "type", "validated": true, "ani": 77.405, "matched_fragments": 90, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Epilithonimonas zeae", "strain": "strain=DSM 27623", "accession": "GCA_900141765.1", "taxid": 1416779, "species_taxid": 1416779, "relation_to_type": "type", "validated": true, "ani": 77.394, "matched_fragments": 112, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium aquaticum subsp. greenlandense", "strain": "strain=UMB34", "accession": "GCA_001507325.1", "taxid": 345663, "species_taxid": 452084, "relation_to_type": "type", "validated": true, "ani": 77.3874, "matched_fragments": 128, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium wanjuense", "strain": "strain=DSM 17724", "accession": "GCA_900111495.1", "taxid": 356305, "species_taxid": 356305, "relation_to_type": "type", "validated": true, "ani": 77.3871, "matched_fragments": 146, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium joostei", "strain": "strain=DSM 16927", "accession": "GCA_900156585.1", "taxid": 112234, "species_taxid": 112234, "relation_to_type": "type", "validated": true, "ani": 77.3847, "matched_fragments": 109, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium paridis", "strain": "strain=YIM B02567", "accession": "GCA_016595215.1", "taxid": 2800328, "species_taxid": 2800328, "relation_to_type": "type", "validated": true, "ani": 77.1508, "matched_fragments": 113, "total_fragments": 815, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003852705.1", "gtdb_species": "s__Amniculibacterium aquaticum", "ani": 100.0, "matched_fragments": 814, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Amniculibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.89", "min_intra_species_ani": "98.89", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_018266955.1", "gtdb_species": "s__Amniculibacterium sp018266955", "ani": 79.2491, "matched_fragments": 371, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Amniculibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018266965.1", "gtdb_species": "s__Amniculibacterium sp018266965", "ani": 78.6746, "matched_fragments": 294, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Amniculibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900187185.1", "gtdb_species": "s__Planobacterium taklimakanense", "ani": 78.1543, "matched_fragments": 103, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Planobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.53", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_012927265.1", "gtdb_species": "s__Chryseobacterium cheonjiense", "ani": 77.9877, "matched_fragments": 107, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014204415.1", "gtdb_species": "s__Chryseobacterium defluvii_A", "ani": 77.9441, "matched_fragments": 91, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900636535.1", "gtdb_species": "s__Chryseobacterium gleum", "ani": 77.7769, "matched_fragments": 122, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_907163125.1", "gtdb_species": "s__Cloacibacterium caeni_B", "ani": 77.7277, "matched_fragments": 146, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Cloacibacterium", "ani_circumscription_radius": 95.1075, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015999765.1", "gtdb_species": "s__Kaistella sp015999765", "ani": 77.7139, "matched_fragments": 89, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Kaistella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019236175.1", "gtdb_species": "s__Chryseobacterium sp019236175", "ani": 77.7137, "matched_fragments": 117, "total_fragments": 815, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000799455.1", "gtdb_species": "s__Chryseobacterium sp000799455", "ani": 77.7094, "matched_fragments": 129, "total_fragments": 815, 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