{ "type": "genome", "identifier": "GCF_003855095.1", "organism": "Gordonia insulae", "title": "Gordonia insulae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chungnam National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_003855095.1", "bioproject": "PRJNA224116", "biosample": "SAMN10160079", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2420509", "species_taxid": "2420509", "organism_name": "Gordonia insulae", "infraspecific_name": "strain=MMS17-SY073", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/02", "asm_name": "ASM385509v1", "asm_submitter": "Chungnam National University", "gbrs_paired_asm": "GCA_003855095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/855/095/GCF_003855095.1_ASM385509v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5962176", "genome_size_ungapped": "5962176", "gc_percent": "67.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_003855095.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "5449", "protein_coding_gene_count": "5305", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-02", "dateModified": "2018-12-02", "datePublished": "2018-12-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Gordonia insulae" ], "sample_taxid": [ "2420509" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seonyu island, Okdo-myeon, Gunsan-si, Jeollabuk-do" ], "sample_host_location_id": [], "data_size": "1.620 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5962176", "Number of Sequences": "1", "Longest Sequences (bp)": "5962176", "N50 (bp)": "5962176", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "5480", "Average Protein Length": "335.2", "Coding Ratio (%)": "92.4", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonia insulae", "strain": "strain=MMS17-SY073", "accession": "GCA_003855095.1", "taxid": 2420509, "species_taxid": 2420509, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1986, "total_fragments": 1987, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gordonia hankookensis", "strain": "strain=ON-33", "accession": "GCA_014673215.1", "taxid": 589403, "species_taxid": 589403, "relation_to_type": "type", "validated": true, "ani": 82.2863, "matched_fragments": 1290, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_024734075.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 81.2789, "matched_fragments": 1035, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia mangrovi", "strain": "strain=HNM0687", "accession": "GCA_009828195.1", "taxid": 2665643, "species_taxid": 2665643, "relation_to_type": "type", "validated": true, "ani": 81.2076, "matched_fragments": 1018, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia rhizosphera", "strain": "strain=NBRC 16068", "accession": "GCA_000298195.1", "taxid": 83341, "species_taxid": 83341, "relation_to_type": "type", "validated": true, "ani": 80.8775, "matched_fragments": 1040, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=DSM 43247", "accession": "GCA_000024785.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 80.1838, "matched_fragments": 896, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=NCTC10667", "accession": "GCA_900450805.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 80.1417, "matched_fragments": 908, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia bronchialis", "strain": "strain=FDAARGOS_1594", "accession": "GCA_020731255.1", "taxid": 2054, "species_taxid": 2054, "relation_to_type": "type", "validated": true, "ani": 80.1151, "matched_fragments": 911, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia amicalis", "strain": "strain=DSM 44461", "accession": "GCA_012395955.1", "taxid": 89053, "species_taxid": 89053, "relation_to_type": "type", "validated": true, "ani": 79.9409, "matched_fragments": 862, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=NRRL B-16283", "accession": "GCA_003183825.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8924, "matched_fragments": 891, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia terrae", "strain": "strain=3612", "accession": "GCA_001698225.1", "taxid": 2055, "species_taxid": 2055, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8676, "matched_fragments": 892, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia lacunae", "strain": "strain=BS2", "accession": "GCA_002149015.1", "taxid": 417102, "species_taxid": 417102, "relation_to_type": "type", "validated": true, "ani": 79.836, "matched_fragments": 901, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia amarae", "strain": "strain=NBRC 15530", "accession": "GCA_000241345.2", "taxid": 36821, "species_taxid": 36821, "relation_to_type": "type", "validated": true, "ani": 79.4114, "matched_fragments": 727, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=ATCC 29627", "accession": "GCA_012396255.1", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 79.0746, "matched_fragments": 736, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonia sputi", "strain": "strain=NBRC 100414", "accession": "GCA_000248055.2", "taxid": 36823, "species_taxid": 36823, "relation_to_type": "type", "validated": true, "ani": 79.0033, "matched_fragments": 727, "total_fragments": 1987, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003855095.1", "gtdb_species": "s__Gordonia insulae", "ani": 100.0, "matched_fragments": 1986, "total_fragments": 1987, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003797825.1", "gtdb_species": "s__Gordonia sp003797825", "ani": 82.5087, "matched_fragments": 1310, "total_fragments": 1987, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014673215.1", "gtdb_species": "s__Gordonia hankookensis", "ani": 82.2884, "matched_fragments": 1289, "total_fragments": 1987, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009862785.1", "gtdb_species": "s__Gordonia sp009862785", "ani": 81.7848, "matched_fragments": 1168, "total_fragments": 1987, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009828195.1", "gtdb_species": "s__Gordonia sp009828195", "ani": 81.2142, "matched_fragments": 1018, "total_fragments": 1987, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002700145.1", "gtdb_species": "s__Gordonia sp002700145", "ani": 81.0537, "matched_fragments": 975, "total_fragments": 1987, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004193205.1", "gtdb_species": "s__Gordonia sediminis", "ani": 81.0133, "matched_fragments": 1088, "total_fragments": 1987, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000298195.1", "gtdb_species": "s__Gordonia rhizosphera", "ani": 80.9165, "matched_fragments": 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