{
    "type": "genome",
    "identifier": "GCF_003855395.1",
    "organism": "Shewanella livingstonensis",
    "title": "Shewanella livingstonensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Polar Research Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_003855395.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10397595",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "150120",
        "species_taxid": "150120",
        "organism_name": "Shewanella livingstonensis",
        "infraspecific_name": "strain=LMG 19866",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2018/12/02",
        "asm_name": "ASM385539v1",
        "asm_submitter": "Korea Polar Research Institute",
        "gbrs_paired_asm": "GCA_003855395.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/855/395/GCF_003855395.1_ASM385539v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4839879",
        "genome_size_ungapped": "4839879",
        "gc_percent": "41.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_003855395.1-RS_2024_04_22",
        "annotation_date": "2024-04-22",
        "total_gene_count": "4229",
        "protein_coding_gene_count": "4037",
        "non_coding_gene_count": "126",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2018-12-02",
    "dateModified": "2018-12-02",
    "datePublished": "2018-12-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shewanella livingstonensis"
        ],
        "sample_taxid": [
            "150120"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica:Livingston Island"
        ],
        "sample_host_location_id": [],
        "data_size": "1.367 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4839879",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4839879",
        "N50 (bp)": "4839879",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.1",
        "Number of CDSs": "4172",
        "Average Protein Length": "322.9",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "25",
        "Number of tRNAs": "95",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Shewanella livingstonensis",
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                "accession": "GCA_003855395.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Shewanella vesiculosa",
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                "species_taxid": 518738,
                "relation_to_type": "type",
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                "ani": 85.6824,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella vesiculosa",
                "strain": "strain=LMG 24424",
                "accession": "GCA_003797885.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella psychromarinicola",
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                "accession": "GCA_003855155.1",
                "taxid": 2487742,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4702,
                "matched_fragments": 1235,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella psychromarinicola",
                "strain": "strain=JCM 32090",
                "accession": "GCA_023283865.1",
                "taxid": 2487742,
                "species_taxid": 2487742,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.254,
                "matched_fragments": 1197,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella polaris",
                "strain": "strain=SM1901",
                "accession": "GCA_006385555.1",
                "taxid": 2588449,
                "species_taxid": 2588449,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1952,
                "matched_fragments": 1168,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella ulleungensis",
                "strain": "strain=KCTC 62130",
                "accession": "GCA_023283965.1",
                "taxid": 2282699,
                "species_taxid": 2282699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8933,
                "matched_fragments": 959,
                "total_fragments": 1613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella inventionis",
                "strain": "strain=KCTC 42807",
                "accession": "GCA_023283595.1",
                "taxid": 1738770,
                "species_taxid": 1738770,
                "relation_to_type": "type",
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                "ani": 81.2781,
                "matched_fragments": 887,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_003855395.1",
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                "matched_fragments": 1611,
                "total_fragments": 1613,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003797125.1",
                "gtdb_species": "s__Shewanella frigidimarina",
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                "total_fragments": 1613,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
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                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCF_010092445.1",
                "gtdb_species": "s__Shewanella sp002836315",
                "ani": 87.3302,
                "matched_fragments": 1298,
                "total_fragments": 1613,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
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                "status": "-"
            },
            {
                "accession": "GCF_014164505.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003797885.1",
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            },
            {
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                "matched_fragments": 1232,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
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                "num_clustered_genomes": 2,
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        ]
    },
    "_bac2feature": {
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        "cell_length": 0.265,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "livingstonensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}